Gene detail

Detail information of GWHGAAEX005023/evm.TU.scaffold_158.68

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4344	0	Uncharacterized conserved protein
nr	gi\|672144180\|ref\|XP_008795985.1\|	0	PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9FG37\|GACP3_ARATH	2.00E-11	Gamma-tubulin complex component 3
trEMBL	tr\|M0SQE0\|M0SQE0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P19770_001}
TAIR	AT1G80260	0	Spc97 / Spc98 family of spindle pole body (SBP) component

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1574730	1601616	-

Transcript Sequence
>GWHTAAEX005023 TGAAGGAAGCTCTGCGATCGGTGAAGGTAGCTCGCAGATTGCTCTTCCTGCGACTCTCTTCCTCTCCCTGAGATTGGTGAAGCTCTACGACTCTATTCCTGCGACTCTCTTCCTCTCCTTGAGATCAGATCGGTGAAGGAAGCTCCGCGTCTCTCTTCCAGAGATCGGTGAAGGAGCCTCCAGAGATCCATGAAGGCGACGAAGGCGCAGTGCCTCCTCTTTGCAATTAGCGTCTGGCGCAACTGTCCGAAGAACTGGCCGCGGGAATAGATAAAACCCCAAATCTGAAAGCACAAAATCACGCTTAAGGGTTTTATACTCCATCGCTGATCAATCGAGGTACAACCGTTCATTCGCTGCCAGAGTTGTAGTCTTATAAATAATTCAGCACATCTTCTTAAATGAGGAAGCCTCTGTGATTCGGTGTGTATTTTGAAGGCGTGAGGTGAAGGGTCATGACTTCTGGAACGATTTTATTGATTTCTTTCTATGCAACTCGGGTGTTAGAAGTTGTCGGCACCATTAAGTTGTTATCTTTGCTTGATTAAAATATATGCGACAATGGCTGAAGTGCATCAGCAGAGTTTTATCAGTAAGCTTCATTCTTGCTTATCAAGTGGCATGCCTCATGCAGAACCACTCTCAAGGTTGAAGGCAGATGAAAGAGAATTGGTACAGGGCATCTTACAGATGTCTCAAGGTTTCTGCAGCTATTTTTTTTATTGGGATGAGAGCATGCAAAAATTTTGGGTGAAAAATGGGATTTTTGTTTGCCATCTATCGCAAACTAGCCTGAACAGCGTTCTGGACAAATTTATTTTCTGTGGAACATGCTTAAAAAGGGTAGAACTCTTTGTTAAGAAAGTAAAAACTTCTAGTCAAAGAGCGCCTACCCTTAAAGCTTTTGCTAACTCCGTTCATTCATGGCTTAAGAAATTGCGGGATCTTGCATTAAAAGTGGAGATAAAGTTAGCTTCTGTCGATTGCCAAGTGACAATCACACTCCTCCAACTTACTAATTCTTTATCAAGTATGTGTTCTGGGGCAGAGTTTCTTACTCAAATAGTGTATGGATCGATACCGAATGAATATATCAACTCTGAAATTGTAATCCCTGCAAATGAATTGGCAGTCAGAATTCTTGATTATCTGTTTAAGAAATTGGGTGAAGTCTGTCTTATACAAGCTGATGAGGAAGATGCATATCATATGCTGCTTTCCATAATGGGAGAATGTTTGCTTCCATATCTTGAGGTGCTTGATTTATGGCTGTACGAAGGAATTCTTGACGATCCTTGTGAGGAGGTTTTCTTTTATGCCAATAATGCAATCACTATTGATCAGCCAACATACTGGGAGACAAGTTATCTTTATCGATGGATTAAATCTATCAGCTCAAAATCCAACGTTGATTTGGCTGAAGGGGGTGTAGAACATACTTCTAGAGTTCGGAGAGAATCAAGCGGTCAGGAATCTGCTTCTTTGCTCTGCAGCGCAGGGGGGATTTTTGATCATAGTAATATTGACTGCCCTATGTTCCTAAAAGAACTGGCAAAACTAATTGTATCTGCTGGGAAATCTCTTCAATTGATTCAACATGTTCAGGGTGACCAGACTTTATTGTTTAATAAGCATTGTGGCGGCGAGCTCTATAGCATTCTAAAATCAGAGGAAACATACCGTCAATTTAGCCCTATGAAAATACATACGTATGAAGAAAATTGCAATTACGATTTTATTATTAGAGATTCAAATAATTTCCTCTTCCCTATAAATTATGCTCGAGTAATGGGAATTTTGACCTTACCTGAAGTTTTTTTGATATCATTAGTGGGTTTAGTAGGTGATGGGGATCACATATATCAGAAATTAACGATGCCTTTCCCTGAAATTGCTGAGATATGCAAACCAAGCATTAACAAAGAGCGTATGCAGAAAGAAGTGACAGATGAGAAGAGATGGGTTAAGTTCTTGGCTGAAGCAATGGAAGGCAAGAGAAAGAAAGATAGAAGCCCCTTTAATAACTCTCTCCATCCTCACAAGTCAAACATGACCGTTTCTAGACAGCTACTTAATTACCACAAAGCCTCCTGGAGTAATCTCAACATATCTCATTATACTCACCTTCCTCCCTTGAATGATGAAAATCTGCGAAAGGCTATTTATACTGAAAAGCTTAGCGGCACAGAAGCAGCTGAAGGATCCCCCCCTAGGTTTCTCGGAACAGATTACACTTTTGGTTTTCTACATAACAAAATTGAACAGACTCATGCCGAAGAGGATATCAGGAATTTGGATTATTTGTACTCCTTTCCAACTCTTCTTCCTGCTTTTGAGGAAGATGTCCCGGTGTCTTATCTTCTTCCTTTCCAGAAAAACAGTTCACTTTCATCGAAAATTCTTAGCTGGATCCAAAACATCAGTATGAGATCGACCAGGCATCCTGATGTCATCATAAAGGAATGCATTTCTGTGTATATTAAAAAGCAGATGGATCAAATTGGCAGACACATACTTTTGAAGCTTATGACTGAATGGAAACTGATGGATCAACTTAATATTATTCGTTCGATTTATTTGCTTGGATCAGGTGACCTGCTGCAGAAGTTCCTTGCTGTAATCTTTGACAAGATGGATAAGGGAGAATCATGGGATGATGATTTTGAGTTAAATACCACACTTCAGGAATCGATCCGAGATTCAGCTGATAGCACGCTTCTAGGCACACCTGATGCTTTGGCTGTGTCAATTTTGTATTCAGACACTGCAGAAGATAATAAGGTTAATAAATCTAACAATATGGCAACTTCTCGTGGTAGGGTTAGTGGCCTTTTTCTTGGCATCGATGCGCTTGATGTTTTAAAATTCTCATATAAGATCTCTTGGCCCCTTGACCTGATTGTTAATGCGGAGGCATTGAAGAAATATAATCAGGTTATGGGTTTTCTTTTGAAAGTCAAACGGGCAAAATATTTGCTCGATAAATCTCGGAAGTGGATGTGGAAGGGAAAGTTGAATGTGAAGAATCGCATGCATCACTTACTAGTTGAACAAAAACTCCTCCACTTTGTTGATGCATTTCATCAATACGTTATGGACCGGGTATTCCACAGTTCTTGGATAGAGCTCTGTGGCGCCATGTCATCCGCAGGCTCCCTCGACGAGGTGATTCAAGTTCATGAAGCCTACCTCACGTCGATCCAGCAACAGTGCTTTGTCAGCCCAGATAAGCTGTGGGCTCTGATTGCAAGCAGGGTGAAGAGCATCCTGGGATTGGCGCTAGAATTTTACTCAATACAGCGGAGTCTGTATAACAATGATGGGGGAGCTGCACCTGCAATCAAGGCCAGGTGTGAAATGGAAGTAGATAGGATCGAAAGGCACTTTGATGAATGCATTGCCTTCCTACTACGAGTGTTATCATTCAAACTGAATGTGGGGCATTTTCCTCATCTGGCTGATCTGGTTGTCAGACTAAACTACAATTACTTCTACATGTCTGATTCCGGAGACTTGCAGACGCTTCTGGGCTTCGAGGCTGCCAAACTTGGGGGGAGGGTACTTCCCTCAGCCTTCTCAGCTGAGTGAGCAATATGCTTATAACCCTAAAGCATTCAATTATCTCAATTTATAAATCTTAAAGATTGATAGCCTCAACCTTATCTTTTATGCTATATGGGGAAATTTATTCAAAAGCATATTTTAAAGAATTGATATATATATATATACATAAAGAAATTTAATTAAGATGTAATTATTCAGACACCCTCTGTACAAAAACTGAATGTGAATTTTGCCTATATTAAAAGTGAGCTGTTTCTCATGCTTCCAGCCTTATGAATTGAAAGAATAGAAAAATACGAGTAGCCTACAATAAGTGTAATCCCAAAGTCTCTAAAGATTGTATACTGCAGAGGCAATGGTGAAATTTGAAAGAGATTATTCCATCACATAGCTGAGATTATTAATGGG

Network for GWHGAAEX005023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04130.12	Spc97_Spc98	41	885	6.50E-101

Protein Sequence

>GWHPAAEX005023
MAEVHQQSFISKLHSCLSSGMPHAEPLSRLKADERELVQGILQMSQGFCSYFFYWDESMQKFWVKNGIFVCHLSQTSLNSVLDKFIFCGTCLKRVELFVKKVKTSSQRAPTLKAFANSVHSWLKKLRDLALKVEIKLASVDCQVTITLLQLTNSLSSMCSGAEFLTQIVYGSIPNEYINSEIVIPANELAVRILDYLFKKLGEVCLIQADEEDAYHMLLSIMGECLLPYLEVLDLWLYEGILDDPCEEVFFYANNAITIDQPTYWETSYLYRWIKSISSKSNVDLAEGGVEHTSRVRRESSGQESASLLCSAGGIFDHSNIDCPMFLKELAKLIVSAGKSLQLIQHVQGDQTLLFNKHCGGELYSILKSEETYRQFSPMKIHTYEENCNYDFIIRDSNNFLFPINYARVMGILTLPEVFLISLVGLVGDGDHIYQKLTMPFPEIAEICKPSINKERMQKEVTDEKRWVKFLAEAMEGKRKKDRSPFNNSLHPHKSNMTVSRQLLNYHKASWSNLNISHYTHLPPLNDENLRKAIYTEKLSGTEAAEGSPPRFLGTDYTFGFLHNKIEQTHAEEDIRNLDYLYSFPTLLPAFEEDVPVSYLLPFQKNSSLSSKILSWIQNISMRSTRHPDVIIKECISVYIKKQMDQIGRHILLKLMTEWKLMDQLNIIRSIYLLGSGDLLQKFLAVIFDKMDKGESWDDDFELNTTLQESIRDSADSTLLGTPDALAVSILYSDTAEDNKVNKSNNMATSRGRVSGLFLGIDALDVLKFSYKISWPLDLIVNAEALKKYNQVMGFLLKVKRAKYLLDKSRKWMWKGKLNVKNRMHHLLVEQKLLHFVDAFHQYVMDRVFHSSWIELCGAMSSAGSLDEVIQVHEAYLTSIQQQCFVSPDKLWALIASRVKSILGLALEFYSIQRSLYNNDGGAAPAIKARCEMEVDRIERHFDECIAFLLRVLSFKLNVGHFPHLADLVVRLNYNYFYMSDSGDLQTLLGFEAAKLGGRVLPSAFSAE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043015	Molecular Function	gamma-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.210
SRP064423	SRR2545915	Juvenile tuber	37.160
SRP108465	SRR5643513	five period of Gastrodia elata	29.170
	SRR5643514	five period of Gastrodia elata	28.330
	SRR5643515	five period of Gastrodia elata	28.020
	SRR5643524	five period of Gastrodia elata	30.380
	SRR5643525	five period of Gastrodia elata	31.860
	SRR5643528	five period of Gastrodia elata	29.040
	SRR5643658	five period of Gastrodia elata	32.500
	SRR5643659	five period of Gastrodia elata	30.650
	SRR5643660	five period of Gastrodia elata	35.620
	SRR5643661	five period of Gastrodia elata	32.910
	SRR5643662	five period of Gastrodia elata	28.540
	SRR5643663	five period of Gastrodia elata	34.580
	SRR5643664	five period of Gastrodia elata	31.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.680
SRP279888	Gastro	Gastrodia elata tuber	24.33
	Juven	Juvenile tuber	62.26
	Mother_Gastro	Mother tuber of Gastrodia elata	45.48
	Mother_Juven	Mother tuber of Juvenile	77.17