Gene detail

Detail information of GWHGAAEX005028/evm.TU.scaffold_158.74

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1278	Endosomal membrane proteins, EMP70
nr	gi\|728833184\|gb\|KHG12627.1\|	Transmembrane 9 superfamily member 4 [Gossypium arboreum]
Swissprot	tr\|F4JRE0\|TMN12_ARATH	Transmembrane 9 superfamily member 12 {ECO:0000305} (Precursor)
trEMBL	tr\|A0A061DNJ3\|A0A061DNJ3_THECC	Endomembrane protein 70 protein family {ECO:0000313\|EMBL:EOX93631.1}
TAIR	AT4G12650	Endomembrane protein 70 protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1661346	1664432	+

Transcript Sequence
>GWHTAAEX005028 ATCGTGCCCACCCACACTGCGTCCGTTCTGATCAACCGAAATTATTCCATAAGATCGGGCCGTTTAAAATCAATTAATGGTTAAGATTAACTGATGCGACCCGGCTCAACTGAGCAATAAGCGGATCGAAGATTGGTCAGTTGTGCTCAATTCATCAGTTTTCTTTTTTTCTCTCGTTCGTCGGTTGCTAAGAGGGATCCGTCTGCTTCCCACCTCTTGTTCCGGAGAGGTTTTATTTCGATTATTTAATATATTGGGGCGGCGATTGTTCCGATATGCGATTCAGATCTTAATATTTTCGTAGCTGGAGATTGAATGATGAGTTTGAATAGTTAGAAATCAAGATTTTGAATGTTAAATCCGCAATAACGAGAGTGAGGCTTTTGATTCCCAATCAACGGAAGTAGCTTTGTTCTATGCCATTGGCCGGCATGTTAACGAACATGAAAGCCCTCTCTTCGTTTTTCTTCTACCTCTTACTTCTTTCCTGGTCCTGCAATGGATTCTATCTCCCTGGAAGCTACATGAGAACTTTTTCTGAAGCTGAACCCATATGGGTGAAGGTGAATTCCCTCACCTCAATTGAGACTGAGCTCCCTTTTAGCTACTACACCCTTCCTTACTGTGAGCCCCAGGGCGGGGTCAAGAAAAGTGCTGAAAATTTGGGGGAGCTCTTAATGGGCGACCAGATTGACAACTCCCCATACAAGTTCAATGTCAACGTCAATGAATCTGTTTATGTCTGCACTACCAAAGCTTTGAGTGAGCATGAGGTAAAGCTTTTGAAACAGAGAACCCGCGATCTGTATCAGGTGAATATGATTCTCGATAATCTTCCAGTCATGAGATTAACTCAGCAGAATGGCCTCACAGTTCAATGGACTGGATTTCCTGTTGGCTACACGCCGACTGGCAGCAATGATGACTATATCATTAATCATCTGAAATTCAAAGTAATGGTTCACGAATATGAAGGCAATAATGTCCAGATTATCGGCACCGGGGAAGAAGGCATGGGAGTAATCTCGGAGACTGACAAGAAGAAAATGTCTGGCTATGAAATTGTAGGATTTGAGGTTGTCCCATGCAGTGTTAGTAGGGATCCTCAAAGCATGTCAAAGCTTAACATGTATGATACGATCGAGCCAATATCCTGCCCTTTAGAGCTTGACAAATTTCAGGTTATTCGTGAACAGGAGAGGATCACTTTTACTTATGACGTTGAATTTGTTAAAAGTAATATCAGATGGCCTTCGAGATGGGATGCATATTTGAAGATGGAGGGAGCAAGGGTTCACTGGTTCTCAATCATGAATTCACTCATGGTTATTTTCTTTTTGGCCGGCATTGTCTTCGTTATATTCTTGAGGACGGTGAGGAGAGATTTGACCAGATATGAAGAGTTGGATAAAGAATCCCAGGCTCAGATGAACGAGGAATTATCAGGCTGGAAGCTCGTTGTGGGCGATGTTTTTAGAGAGCCATACTGCTCCAAGCTTCTCTGCATTATGGTCGGAGATGGCATTCAGATTGCCGGGATGGCTGTGGTGACTATAGTTTTCGCGGCTCTCGGATTCATGTCGCCTGCCTCACGAGGCATGCTTTTAACAGGGATGATTGTTCTCTATCTTTTCCTAGGCATTGCTGCCGGCTATGTCGGTGTGCGGCTGTGGAGGACCATCAAAGGAGGGTCTGAAGGTTGGAGGAACCTATCCTGGTTGATCGCCTGCTTTTTTCCGGGAATCGTATTTGTCGTCCTAACAATTTTAAACTTCATTCTATGGGGAAGCAAGAGCACCGGGGCAATCCCCATCTCATTGTTTTTCACTCTTTTGGCAATGTGGTTCTGCATTTCAGTTCCTCTCACTCTTCTAGGCGGATTTATGGGCACAAGAGCGGAGCATGTACAATACCCGGTTCGGACAAACCAGATTCCGAGAGAAATTCCTGCTCGGAAGTATCCTTCATGGCTTCTAGTCCTTGGGGCAGGAACCCTCCCCTTCGGCACCCTGTTCATTGAGCTTTTTTTCATACTTTCCAGCATCTGGCTTGGGAGGTTTTACTATGTCTTCGGGTTTTTGCTGGTGGTCTTTCTTTTGCTGGTCATCGTCTGTGCTGAGGTTTCAGTGGTTCTAACTTACATGCATCTTTGTGTTGAGGACTGGAGGTGGTGGTGGAAGGCTTTCTTTGCGTCTGGTTCAGTCGCACTTTATGTGTTCCTTTACTCTGTTAATTACTTGATATTTGACTTGAGGAGTTTGAGCGGTCCCATATCAGCTATTCTTTACCTCGGGTACTCTTTTATCATGGCTTTCGCGATCATGCTTGTTACAGGTACTATTGGCTTCCTCGTATCTTTCTTCTTCATTCATTACCTCTTCTCCTCGGTGAAGATCGACTAGATTGTTGGCTGCAATATTCAGTTGAAGGGTCTATCAGTTCAAAAGGTTAGAAGTATGACTAATGTTCAATGCTCGCTTTTTTTGTTTTCTTAATATATGCTTTTATATGGCATGGAGATTAATTTAGTGTGATTGAAAACTTATGACTGGCTATTTTGCGCATGCTATCTTTACAAGCAGAGTTTTCTATTGTGATTATCTATGAAATATGAAACTTTAGAAATCGCATTGTTTTTAGTCAAAAGGATAATATATTTTAAATTTTTTCTGTTGCTCATCTTTCACAGAACAATTCGTGTATAAGAAAGAGTGTGTGAAGAGTGTTTTTCTACCTGGTTTTACAAGGCAT

Network for GWHGAAEX005028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02990.15	EMP70	61	613	1.20E-181

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.920
SRP064423	SRR2545915	Juvenile tuber	52.820
SRP108465	SRR5643513	five period of Gastrodia elata	58.670
	SRR5643514	five period of Gastrodia elata	53.080
	SRR5643515	five period of Gastrodia elata	59.160
	SRR5643524	five period of Gastrodia elata	56.130
	SRR5643525	five period of Gastrodia elata	73.490
	SRR5643528	five period of Gastrodia elata	59.360
	SRR5643658	five period of Gastrodia elata	79.730
	SRR5643659	five period of Gastrodia elata	54.990
	SRR5643660	five period of Gastrodia elata	53.680
	SRR5643661	five period of Gastrodia elata	47.930
	SRR5643662	five period of Gastrodia elata	50.510
	SRR5643663	five period of Gastrodia elata	51.070
	SRR5643664	five period of Gastrodia elata	37.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	69.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	73.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	76.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	71.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.750
SRP279888	Gastro	Gastrodia elata tuber	41.11
	Juven	Juvenile tuber	54.29
	Mother_Gastro	Mother tuber of Gastrodia elata	56.34
	Mother_Juven	Mother tuber of Juvenile	46.83