Detail information of GWHGAAEX005035/evm.TU.scaffold_158.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743887077|ref|XP_010910301.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Elaeis guineensis] |
| Swissprot | tr|Q9LUS3|PP237_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g16610 |
| trEMBL | tr|F6HVU2|F6HVU2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58805.1} |
| trEMBL | tr|F6HVU2|F6HVU2_VITVI | 2.00E-57 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58805.1} |
| TAIR | AT3G16610 | 0 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 1769882 | 1783762 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005035
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 123 | 151 | 0.0037 |
| PF01535.19 | PPR | 222 | 251 | 0.0021 |
| PF01535.19 | PPR | 324 | 349 | 9.90E-05 |
| PF01535.19 | PPR | 398 | 420 | 0.14 |
| PF13041.5 | PPR_2 | 423 | 470 | 6.40E-08 |
| PF13041.5 | PPR_2 | 525 | 572 | 1.70E-10 |
| PF14432.5 | DYW_deaminase | 698 | 822 | 2.10E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.500 |
| SRR2545915 | Juvenile tuber | 6.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.250 |
| SRR5643514 | five period of Gastrodia elata | 4.480 | |
| SRR5643515 | five period of Gastrodia elata | 4.020 | |
| SRR5643524 | five period of Gastrodia elata | 4.320 | |
| SRR5643525 | five period of Gastrodia elata | 5.090 | |
| SRR5643528 | five period of Gastrodia elata | 4.410 | |
| SRR5643658 | five period of Gastrodia elata | 3.510 | |
| SRR5643659 | five period of Gastrodia elata | 6.290 | |
| SRR5643660 | five period of Gastrodia elata | 6.330 | |
| SRR5643661 | five period of Gastrodia elata | 6.350 | |
| SRR5643662 | five period of Gastrodia elata | 6.220 | |
| SRR5643663 | five period of Gastrodia elata | 5.940 | |
| SRR5643664 | five period of Gastrodia elata | 6.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.42 |
| Juven | Juvenile tuber | 8.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.23 | |
| Mother_Juven | Mother tuber of Juvenile | 7.68 |