Gene detail

Detail information of GWHGAAEX005036/evm.TU.scaffold_158.83_evm.TU.scaffold_158.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|479132289\|ref\|YP_005072249.1\|	7.00E-43	WD-40 repeat protein [Arthrospira platensis NIES-39]
KOG	KOG0267	1.00E-179	Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)
nr	gi\|672160720\|ref\|XP_008800146.1\|	0	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Phoenix dactylifera]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|J3L4P0\|J3L4P0_ORYBR	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}
TAIR	AT5G23430	1.00E-179	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1786289	1821697	-

Transcript Sequence
>GWHTAAEX005036 CAGCACAAATAAAAAACAAATAACAAAAATTAAAAAGAGAGAGAATGAAAGCATTGGACCCGAGTCCCGCACTCCACTACCCAGCAACTCCTTTCCCTTTTGCATCCCGCTCCCTCTGCCCCAGGAGTACTTTCTTCAGCCTCCGCTGAGAAGCGTTTCACTAATCAAAAGAGCCGAACTCGTTTTGGACTTAGAAACCCCGCGCGAAGATTCAACCGCAGAGCCATGGAACCTGAGCAAATGGCGAAGCGGGGCTTCAAATTCCAGGAATTTGTAGCACATGCAGCTGATGTCAACTGTTTATGTATTGGAAAGAAATCATGTAGAGTTTTTGTCACTGGTGGCAGTGATCGCATTGTCAGTATGTGGGGGTTTGATACAACAAACTCTTTGCTGAGCCTATCTGGTCACACTGCCTCAGTTCAGTCTGTAACCTTTGATTCAGCTGAAGTTTTGGTTTTGGCAGGAGCCTCTAACGGCACAATCAAGCTTTGGGACTTGGAAGAAGGAAAGAGCGTACGAACTGTCACTGGGCACAGATCTAGCTGCACTTCTGTTGAATTCCATCCATTTGGTGAATTCTTTGCATCTGGATCTATGGATACTGATCTTAGGATATGGGATATTAGAAAGAAAGGTTCCATTCATACTTACAAGGGCCATTCACGAGGAATCAAAACAATCAAATTTACTCCTGATGGTAGATGGGTTGTTACTGGAGGGGAGGACAACATTGTAAAGTTATGGGATTTGACAGCAGGGAAGCTTCTGCATGATTTCAAGATCCATAAAGGACCGATACGCTGCATTGATTTTCATCCACATGAGTTTCTTCTTGCAACAGGTTCTTCAGATCGTACAGTGAAATTTTGGGACTTAGAAACATTTGAGCTCATCGGTTCCTCAGGTCCTGAGGCCACTGGAATACGCTCTATGATTTTTCATCCTGATGGAAAAACTCTGTTCTGTGGGTTGGATGAAGTTTTGAAGGTTTTATCTTGGGAGCCTATAAGATGTTATGATACTGTTGAGATGGGCTGGTCTTCATTGGCGGACTTTATTATTTATGAAGGAAAACTTTTGGGATGTTCTTATCATCAAAATCGTGTTGAGGATTGGATTGCAGATATTTCGCTTATTGGGCCATATGCAATTGGTCTTGGGCTAAATAAAATGAACCTAATGGAACCGATTTCAAGTCACATGGAAAATTCATCTATTGGGCATATAGAAAGCGACACGAAATGCAATTCACCGCTGGTTACAGGAGCTGTAGACCATGAAACAAAAATAAAAGGGGAACTTGGAAGCCTATCTGGTTGCTTTAATGAATACAGCCAAGATTCTTCGCAAGAAACTGATTCCATCAATCCATCAAGCATTTCATTGGCTTCAAATGGACCAAAATTAAGAACCTCATCTAGCAGAAAAATTACTAAAAAGAAAATCGATTCGCAGATTTCTTCATCCACATTGAATTCTACTTCATTCAGGGTTGTTAAAATGCCTGAAACATCTGCTAGAACTTTAAAGAAAACCGTGTCAAATTGTTTTTCAAGGGATATATCACCAAGCACGAATCCATTGTGTAAAAATACTTTGTTATCGTCAAATGGGCCTTCTGTGGAGTTGCACGCTGTTAAAAAAAATCAAGAATTTTCTATTCCTGTAATTGTTCCTAGGGAACATGCAGACCGTGAAACAATAACCAGTCCCAGTGCAGCTAACTCAAGTGCAGATTCAGTGGCCTGTGATATTATATTTAGCGGTTCAAGCCATGTCACTAGATCCTCTAGTCATGCTAGTGGAATTCATTCTCCATCAACTGGAACCGCATGTGGATCTTCAAATGGTGCCAGTAGCATTCAGGAGCATGAAAACTATAGTTCAAAATCTAGGCAAATAGGAATTTCAGGAACACCTGAAGCTGGCAATGGTAACTGTTCTAGTATCAGATATGCTGAAGAGAAATTCGAAAGAATCATGCATCATGAGCAGGCCGTCACAGTACAATCTTATAAAAGTGAAGAGCAAGCAAGCTCAAGCAACAACTGTTCTGTTAAATATGTTAGGGGAGTTGCTGTCCAACTTGGCAAGACACGTTCTTTGGTTGAAAGATTTGAGAGAAGAGAAAGTCTTGATCATTCAGCCACAAAAGAACCCATTCAAGGTGAAGGAAGGAATGCGCAGTTAGAAAATGATTATTTGATTTGTGATATTCTGTTACAAAACCATGACGCCTTTATAAATTCTTTGAAGTATCGTCTAACAAAACTGCAGGTTGTACGGCATTTTTGGGAAAACAATGGCATTAAAACTGCACTTGATGCTGTTGCAAAATTACCAGACTACTCGGTTCAAGTTGATTTGGTCAGTATCCTCAAGGGAAAAATTGAACTGTTCACCCTCGAACTTTTTTCATGCTCTCTCCCTTTGCTTCTTGGCTTGATAAGCAGTAAGATTGAAAGGCATACCATTGTGTCCCTGGAAATGCTTTCAAAACTCGTTAAAATTTTTGGGCAGCCGGTCTCCTCAACCATAACAGCAGCTCCGCTTGTGGGTGTTGATCTTCATGCTGAAGAACGGTTTCGGCGGTGCCAACAGTGTCATAAGCATATGGAGAGAATAAAGCAAATTCTTCCTTCACTAATCAGGAGAGGGGGATTAGTGGAAAGGCATGCGGCAGAATTGAATGTTTTTTTTCAGAGGTCATAGTCAGAAGCCCCTTTGAAATGGCATGAAAGCTTTACTTGATTGGAAAAGAGAAATGGGAGAAGCTAGGCCACTGCCCCCTGCACAGCCCAAAACGCATAAAGATTTTGGCGGGACAGTGATTTTTTTTTTTCTTCAATATTTATGAAAGCTCTGCAGTTGAGTCTGTACATTGCTTAACTGCTTGTTTAGTCTGTACCAGATTGTAAGATGGTTAGTTGTTTGAATTAAATTATCAGTTCCTATTGTTTCTTTCAATTAATCTTCGTCTCCAATATTATTTAGGGTTTTACCAGTCATCATTTTTCATTCTATGTTATTATTGAGGGAGGGAGAATGAAGGAGGCTGGCAGCTTTTTTTTATTAAATAAAGTTAAATTTATATTTTTAAAAGCAGCGATTACATGATCTCGTTGTTCAATATGGC

Network for GWHGAAEX005036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	14	48	0.24
PF00400.31	WD40	55	91	0.00023
PF00400.31	WD40	95	133	2.10E-08
PF00400.31	WD40	140	175	3.50E-09
PF00400.31	WD40	179	217	1.70E-07
PF13925.5	Katanin_con80	668	824	5.50E-45

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051013	Biological Process	microtubule severing
GO:0008017	Molecular Function	microtubule binding
GO:0005515	Molecular Function	protein binding
GO:0008352	Cellular Component	katanin complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	113.360
SRP064423	SRR2545915	Juvenile tuber	99.780
SRP108465	SRR5643513	five period of Gastrodia elata	47.240
	SRR5643514	five period of Gastrodia elata	49.910
	SRR5643515	five period of Gastrodia elata	41.530
	SRR5643524	five period of Gastrodia elata	42.410
	SRR5643525	five period of Gastrodia elata	79.040
	SRR5643528	five period of Gastrodia elata	47.070
	SRR5643658	five period of Gastrodia elata	78.930
	SRR5643659	five period of Gastrodia elata	62.020
	SRR5643660	five period of Gastrodia elata	65.740
	SRR5643661	five period of Gastrodia elata	52.050
	SRR5643662	five period of Gastrodia elata	56.450
	SRR5643663	five period of Gastrodia elata	71.000
	SRR5643664	five period of Gastrodia elata	73.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	77.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	64.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	95.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	84.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	76.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	70.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	57.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.130
SRP279888	Gastro	Gastrodia elata tuber	54.34
	Juven	Juvenile tuber	52.92
	Mother_Gastro	Mother tuber of Gastrodia elata	31.48
	Mother_Juven	Mother tuber of Juvenile	49.28