Gene detail

Detail information of GWHGAAEX005037/evm.TU.scaffold_158.84

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1677	8.00E-94	CCCH-type Zn-finger protein
nr	gi\|743832572\|ref\|XP_010935018.1\|	1.57E-162	PREDICTED: zinc finger CCCH domain-containing protein 56-like [Elaeis guineensis]
Swissprot	tr\|Q84UQ3\|C3H56_ORYSJ	1.00E-128	Zinc finger CCCH domain-containing protein 56
trEMBL	tr\|I1I1E0\|I1I1E0_BRADI	7.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI3G16377.1}
TAIR	AT1G32360_1	8.00E-94	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1835332	1844458	-

Transcript Sequence
>GWHTAAEX005037 GAGCTGTTTGTTAGGGTAGAATTGGTAAGAATCTCTCCACTTTCTTATGTGTTTTTTTTCTAGTCAATGAAATCGCTTGCTTGAGAATCCAGGGCATGCTTTTATTTGCTATTGATTGCTTTTGTGAGTTTGAAATTGCTGCTGTGATGGAATGGATTCGTCTGCTTGCGTATTATAATACTTATTAGGTGTTTGTTTTGAATTTAAAATTGCTGCTGTGATAGACTGAAATAAAATAAAAATATTAGGTGTTTGTTTGGTGGTGACTGTTTGCATTTTGAAATGTGTCTATAGATTAATTGTCAATGCTAAAATAGAATTTTGCTGTGATGATATGGAGTCAGCTTAATACGAGTGTTTGTTAAAACAAGTGTTTGTTTGGTGGTGGCTGTTTGCATTGTATAAAACTATAAAATGAATTATAGAACATGTCTAAATGTCAAATCTAAATTAGAATTAAATGAATTCTTTGTTGTAGTGGCTTTGTAGTGTGTTTCTTTTTTGTTGATCAGTAGGAGTGAGGGGGATGTGTCTGGGATGAGCAGTCTATTGGTCTGTTTGCAATTAGTATATTATCTCATGGTGAGGTCGGGAGACGGCCATCTAGTGACCGTCTAATGACTTGCTGGCAAAGACGCAGATTCTTGATTTCTCCACGACTCAAATATTGCATACCCATAGTTTTGAATGACATTCAGGTCCTTTTTTGCATTTCAAGGATATTAAATTTTCTAAACTCTTACAATGTAACTCAAATTCCACAAACCGTTTACCCAAAATTTCATATTTCTGAGATACCAATTAATTTACATCCAATTACGTAAAACAAATAGCCCCTCAAGGTACTTCTAAAATTAACAATCACCCCACTATTTATAACTATAATGTTAAAACTTTATCTTATAGCCTTTCTTACTTTCACTCGTAGTAACAACAATATCATGGTTGCTTGCATTTTATAGAACGTTGTTATAAATGAATTATTGAACATGATTAAATGTTAGTATTAAAATAATATAAAATGTCTTCCTTGTTGTTGATCATATTTTTGAGTTTGATAGTGATGCTGTGATGGTATGGATTCAACTTATTAATTGCATCCTGTTATTTGGTCTTTAAAAATGATATTTTATTATCTAGGTTTTGGCTTTGTGGTGTGTTTCTGTATTGTTACTCGGTAGGAGTGAGAGGATTGTATTTGGGAATGAGTAGTCTATAGGTCTGTTGGCAATCTTAGGAACAAGTTTTTTTATATTTTTATTGCATTGCTAGATTGCAATAAAAGAAATGAGGAAGAAGTAATTTGATGATAATGTGCTTTTGGCATTTGTTTATTCTGAATATATTTGCAATTTATTTTCCAAATTTGAGTGTAGTTAGTTTATGTGAAATTTGTTTATTGTTAGTTTATGTGAATATATGTTTCAATTTAGTTATGCTTTAATATCTTATAATACATTTTTTATTTCACATATATATTATTACAAAAAGGAGCGATATTCTAAAAGAAGATTTATTGTTTATAAAAGTATTAGTGAAGAACAAAATGCTAACTAACATTCAAACTAGTGATCTTATTGACAATGGAAGAATTATATGATGCTTTCAAAATATAAAGTTTTCGAGATTTTAATAAAATTGACTCTACATGGATTACGGAGGCAGATCTGGTCATGCTATTGAGATTATTCCAGATACATCCGCAGTTTGTCCTGATCCTGTTCCTCCTATGATTGATCAATCACTATGGGCCACAGAAGACGATTATCGTGCTTGGAATGGTGATCCTCCTTCAATGGACTCCATTTCAAGTCAAACAAATGATGGTAGAAATCCCCAATCCCGGGCGGGAAGTGAACAACCCAACAGCAAGAAGCCCCGCACCTCCTCACAGGGAGATTCTGGTCCCAGCAAGTCCAAAGCCCTTGGTAAAATGTTCTTCAAAACCAAACTATGCTGTAAATTTCGTGCTGGGATATGCCCTTTTATCACAAACTGCAACTTTGCTCATGGAATGGAAGAGCTCAGGAAGCCGCCTCCTAATTGGCAAGAAATTGTGGCAGCTCATGAAGATGGCAATCTTGTTGAACCATGGGAGGAGCACCAGATTCCAATTCTGACTTCATCCCCTGTTGTGGGTGATGCACAGAGATTATATAAGGGGAAACTTTGCAAGAAGTACTATACCGATGAGGGATGCCCCTATGGTGATACTTGCACCTTTTTGCATGATGATCAGTTAAAGGGTCGCGAAAGCGTGGCTATAAGCCTTTCTCCAACTGTTGGAGGGGGAGGTTTTGCAGGCGGAGGAGGAAATGGAATGAGTCAGAAGCCCTCAAACTGGAAGACTAGGATCTGTAACAAGTGGGAGATGACTGGATACTGTCCATTCGGCAGCAAGTGCCATTTTGCTCACGGTGCTGCAGAGCTTCATAGATATGGTGGGGGATTGCTAGAGACCGAATTGAGGGATGCTTCAGCAGTGATGGACTTGAAGCAGGCTGGCTCGTCAGCTAAGATAGCTTCCGATGCAGTTATGGCACCGAACAACTCAGTTTCTCATGCAGATGCTTATCATGTTGGAATCCCTGCGCAGAGATCATCCATATTAATAAATCAGAGGCAGCAGATTCAGCAAAGACCCATTCAAAAATGGAAGGGCCCAATTAAGATCAGCAGAATCTATGGTGACTGGATTGATGATTATGAGTGA

Network for GWHGAAEX005037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	98	123	5.80E-05
PF00642.23	zf-CCCH	170	195	3.50E-05
PF00642.23	zf-CCCH	232	257	6.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.780
SRP064423	SRR2545915	Juvenile tuber	24.730
SRP108465	SRR5643513	five period of Gastrodia elata	18.190
	SRR5643514	five period of Gastrodia elata	15.250
	SRR5643515	five period of Gastrodia elata	15.280
	SRR5643524	five period of Gastrodia elata	17.820
	SRR5643525	five period of Gastrodia elata	13.330
	SRR5643528	five period of Gastrodia elata	11.760
	SRR5643658	five period of Gastrodia elata	9.080
	SRR5643659	five period of Gastrodia elata	23.110
	SRR5643660	five period of Gastrodia elata	24.230
	SRR5643661	five period of Gastrodia elata	22.750
	SRR5643662	five period of Gastrodia elata	19.440
	SRR5643663	five period of Gastrodia elata	22.340
	SRR5643664	five period of Gastrodia elata	20.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.290
SRP279888	Gastro	Gastrodia elata tuber	23.07
	Juven	Juvenile tuber	28.03
	Mother_Gastro	Mother tuber of Gastrodia elata	23.52
	Mother_Juven	Mother tuber of Juvenile	19.83