Gene detail

Detail information of GWHGAAEX005039/evm.TU.scaffold_158.88

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|390945305\|ref\|YP_006409066.1\|	5.00E-75	RNAse R [Belliella baltica DSM 15883]
KOG	KOG2102	0	Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
nr	gi\|672164649\|ref\|XP_008802209.1\|	0	PREDICTED: DIS3-like exonuclease 2 [Phoenix dactylifera]
Swissprot	tr\|P0DM58\|DI3L2_ARATH	0	DIS3-like exonuclease 2 {ECO:0000255\|HAMAP-Rule:MF_03045}
trEMBL	tr\|F6H0T5\|F6H0T5_VITVI	0	DIS3-like exonuclease 2 {ECO:0000256\|HAMAP-Rule:MF_03045}
TAIR	AT1G77680	0	Ribonuclease II/R family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	1890329	1893817	-

Transcript Sequence
>GWHTAAEX005039 AAAATCGAGAAGACTTGCATCTCCACTTTACCACTTCTCTTATTTCTGGCTTTTATAGCTTTCTTCTTTCTACTTCTCCTTGTCTTCAAGCTTCGAATACCTCATGTATTTATTGAATCGCCAGATGCACGTTTCCTTCGTCGTCGCACTCCCATCGTCTAAACATTTTATTGGGATCATCGGATCAGCCAACACCAGATCTCTATCTTCTTCCTTTTACGCTCACCCCTTCCTTCCTCGGACCGTCGCTTCAATCTAGGGCAAGATTTAGCTATATGAAGACTGGGGAACTGCTGCTGGTTTCCTTAGCCGATGATTCCGACATCATCAAGAAGCGACGACGGCAGGCGCGCAGATCGAAGCAAACTTCTATGGAAAACGGTACACCACAATTCACGGTGGATGCAATCGGCATCGAAACTTCGAACTCGTGTCCTTCGCCGCTCCCATCGTTCTCTCTCTCGTCGGAGCATCCGAGTAAGATTTCGGGGAGGAAATACTTTGCTCCTTACCTGTCGGATGAAGCCGTAGAAGAGGCCGTTGAGAGAGGAAACGCATTCAAATCCACCTTTCGTGCGAACGCGCACAACCGACTGGAAGCCTATTGCACCCTTAAAGGTGTTCCCGTAGATGTTCTCATCAATGGCGTTGAAGCGCAGAATAGGGCTATTGACGGTGACGTCGTCGCAGTTGCGCTGGATCCTGCTGCCGACTGGTCCAAGCTAAAAGGATCAAGCGGAATGGTTTCGCTTAATCCAAAGCTGGATGCTGATTCCTGCAGTGTCGGTGGCAGATCTGAAGGAAATAATGTTCTTCCCCAGGTGCTTCCTTGCTCAAGTTCCTCGACTGAACAATGCGAGGCTGATAGAGCGTTGGATAGGATCTGCGCTATGATAAATTCCCACCCCTTGAAACGGCCAACTGGAAGAGTTGTGGCAATTTTGAAAAGCTCTCCTAAAAGACTGTCTGTTATTGGTTTTCTTTCTGTGAAACAATGCCTTGCTGATGAAGAAGGTTTGGGAAGACTGGCGAATGGGCACTTTTCAAAGAAAAACAAGAGCCAGTTTGCTGCACAGGAACAATGGGTTGAGTGGATACATTTAATCCCCACGGATCCCAGATTTCCCAAAATGATGGTCAGCATTAGATCCCTGCCAGGCAGTATTAAAGAGCGTGTGATGGCTGGCGATATTACTGTTGAAAGGGAACTTGTTGCTGCAGAATTATTTGAGTGGAATGAGGAAGTATTGTACCCTTTCGCCCGGGTTATTGATGTTTTCGGAAGGGGTGGAGAAATTGAACCGCGAATAGCTGCTATTTTGTTTGAGAATTCCATCTGTGCAGCTAGATTTTCTTCAGAGTCTCTGGCTTTCCTTCCAAACAAGCCATGGAAGATCCCTGAAGATGAACTTGAGAGCAGAAAGGATCTTAGAAATATTTGCTGTTTTACCATCGACCCCTCTTCCGCCTTTGAACTTGATGATGCTTTATCAGTCGAAATATTGTCGGATGAAATATTTCGGATAGGAGTTCATATTGCAGATGTTTCGTACTTTGTTCTTCCAGATACGGCTTTAGATGCCGAGATTCAAGCACGGTCCACTAGTGTTTATATCTTACAGAACAAGATTTCAATGTTACCTCCAGAGCTTTCTGAAGAATTGTGCTCGATTTTACCAGGTGAGGATAGGCTCGTCTTTTCTATTATTTGGGACATCAATCATTCAGGAAAGGTGATAAATCGTTGGATTGGGCGGTCGATTATTAATTCTTGCTGCAAACTGTCATATGACTTTGTTCAGGATCTAATTGAAAAGTCATTTGTTGCTGACAAACTCACTCTGTCAACTAGTGCAAGCACCAAGGTTCATGAGCATTTTAGCTTGAAGGATGTTGTCGGTTATCTTGAAATTCTCTATGGAACATCTAACAAGCTCAGAGAAACTAGATTTAATGATGGAGCTCTTGAGCTTGAAACTTTTAAATTTGGTTTCTTATTTGATGAGTATGGGGCGCCATATGAGAGTATAGTAAGTGAGAGAAAGGAGTCCTGCTGTCTAGTAGAGGAATTTATGTTATTGGCAAATAGGACTGTGGCAGAGGTTATTTCTCAAGCTTTTCCTGATTGTGCATTATTACGAAGACATCCCGAGCCAAATCTAAGAAAGTTGAAGGAGTTTGAAACATTTTGTAGCAAGCATGGCTTTGAGTTAGATACTTCATCTTCCGGTCAACTTCATCTCTCACTTTTAAAAATTAAGGAAAAAATTAAAAATGATCCTGTTTTGTTTGATATTGTGGTATCTTATGCTTCGAGGCCTATGCAGTCAGCAGTATATTTTTGTACTGGGGATTTAAAAGGAAAACAAAATGAATGGGCTCATTATGGTCTTTCTGTTCCTTTGTACACTCATTTTACATCGCCGATTCGGAGGTATCCCGATATCATTGTACACCGAACCTTGTGTGCCGTGCTTTATGCTGAGGAAATGTATCTGAAGCAAAACTTAGATAATATCGAAGCATCAGAAATTGAAAATGTAAACACATGTTTTACTGGACTTCATTTTAATAAGCATGCTGCTGAATCTTCCATTGGTAGGGAAGTTTTGTCTTCTTCTGCATTGAAGTTCAAAATAGCAGACGTTGATGCTTTGGGAGAACTTGCTGCACATTGTAATGAAAGAAAACTTGCTAGCCGACATGCTGAGGAAGCTGGGGAGAAATTATACCTTTGGGCACTTTTGAAGAAGAAAGAGACCCTTGTTACTGAAGCTAGGGTTTTGGCATTGGGGCCAAAATTTATGTCAGTTTACATTCAAAACTTTGGCATGGAGCGACGAATATATTATGATGATGTTGAGTGCTTGGCTGTTGAATGGCTTGAGATGACGGGCACATTGATTTTGGATTTGATTAGGAGCAAGATTATTCGGAGAAGGGGTGCCCCCGGAAAGTTTCGTCCCCTTGAAGATGTTGTCTTTTTGAGAGATCCATCTGCATCAGGTCCAGATGAAGAAAACACTGAAACAATTAGTTTTGGAGGAGGTTCTGCAAATTTTATGTCATCTGTCCTTTTAGAAAAGTGTAAGCCGGAGGCTGTCTTCTTTCCTCTTGTTTTGCATAATTTGTCACCTGTTTCTATTATTCTTCAAGCCATCGGTGGCGATGATGGCCCTTTAGACATAGGAGCTAAATTGTATATGAGCTCATATTTTAGTTAGGTGCTGAGGCTGTAGAAGAATTTGGGCATAGGAGATGTTTAAGAATTGAAGTTTTTTTTTTCTTTTTTCTTACGTGTCCTAAAAGAGGATGATGGAACTTTTGTCCACAGGATTCCTGAATCTTACAAGTCTTGACTTGTTAACAGTAGTTTATAATATTGTATTTGTTGAACTTCTTTTAGAAACAGTCTTCCTTCTCGAAGAAACGATTGACATGTAGAAAGCTTTACTTCATAATATTCTTTTTAATTTTTGCACTTTTAGC

Network for GWHGAAEX005039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00773.18	RNB	382	735	3.60E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034427	Biological Process	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0004540	Molecular Function	ribonuclease activity
GO:0003723	Molecular Function	RNA binding
GO:0000175	Molecular Function	3'-5'-exoribonuclease activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.320
SRP064423	SRR2545915	Juvenile tuber	18.340
SRP108465	SRR5643513	five period of Gastrodia elata	14.340
	SRR5643514	five period of Gastrodia elata	13.160
	SRR5643515	five period of Gastrodia elata	15.750
	SRR5643524	five period of Gastrodia elata	12.920
	SRR5643525	five period of Gastrodia elata	17.360
	SRR5643528	five period of Gastrodia elata	18.230
	SRR5643658	five period of Gastrodia elata	16.250
	SRR5643659	five period of Gastrodia elata	12.340
	SRR5643660	five period of Gastrodia elata	15.290
	SRR5643661	five period of Gastrodia elata	12.380
	SRR5643662	five period of Gastrodia elata	12.660
	SRR5643663	five period of Gastrodia elata	13.540
	SRR5643664	five period of Gastrodia elata	10.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.810
SRP279888	Gastro	Gastrodia elata tuber	13.38
	Juven	Juvenile tuber	14.31
	Mother_Gastro	Mother tuber of Gastrodia elata	16.64
	Mother_Juven	Mother tuber of Juvenile	23.81