Detail information of GWHGAAEX005040/evm.TU.scaffold_158.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182414675|ref|YP_001819741.1| | 2.00E-21 | 30S ribosomal protein S1 [Opitutus terrae PB90-1] |
| KOG | KOG1070 | 0 | rRNA processing protein Rrp5 |
| nr | gi|672109238|ref|XP_008789163.1| | 0 | PREDICTED: protein RRP5 homolog [Phoenix dactylifera] |
| trEMBL | tr|M0TFH4|M0TFH4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P07340_001} |
| TAIR | AT3G11964 | 0 | RNA binding;RNA binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000170 | 1932863 | 2017009 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005040
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00575.22 | S1 | 490 | 553 | 3.00E-05 |
| PF00575.22 | S1 | 579 | 636 | 4.90E-06 |
| PF00575.22 | S1 | 1266 | 1329 | 1.50E-06 |
| PF00575.22 | S1 | 1457 | 1528 | 3.30E-12 |
| PF05843.13 | Suf | 1828 | 1914 | 8.90E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0006396 | Biological Process | RNA processing |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.880 |
| SRR2545915 | Juvenile tuber | 42.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.360 |
| SRR5643514 | five period of Gastrodia elata | 21.250 | |
| SRR5643515 | five period of Gastrodia elata | 18.750 | |
| SRR5643524 | five period of Gastrodia elata | 20.210 | |
| SRR5643525 | five period of Gastrodia elata | 5.750 | |
| SRR5643528 | five period of Gastrodia elata | 4.600 | |
| SRR5643658 | five period of Gastrodia elata | 5.340 | |
| SRR5643659 | five period of Gastrodia elata | 22.240 | |
| SRR5643660 | five period of Gastrodia elata | 23.800 | |
| SRR5643661 | five period of Gastrodia elata | 21.820 | |
| SRR5643662 | five period of Gastrodia elata | 17.660 | |
| SRR5643663 | five period of Gastrodia elata | 20.670 | |
| SRR5643664 | five period of Gastrodia elata | 19.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.64 |
| Juven | Juvenile tuber | 48.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.71 | |
| Mother_Juven | Mother tuber of Juvenile | 40.44 |