Gene detail

Detail information of GWHGAAEX005047/evm.TU.scaffold_158.96

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672162538\|ref\|XP_008801087.1\|	0	PREDICTED: uncharacterized protein LOC103715285 [Phoenix dactylifera]
trEMBL	tr\|A0A061EQ91\|A0A061EQ91_THECC	0	BTB/POZ domain-containing protein isoform 1 {ECO:0000313\|EMBL:EOY06522.1}
TAIR	AT4G15840	5.00E-146	BTB/POZ domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	2104759	2127553	-

Transcript Sequence
>GWHTAAEX005047 AAATTATTGAAACGATATTATTTATTTGTATATATTAAGTTAGATGCTGTGTTAAACAAATGTCAAGCTTGTAGAGAACCTTATTTAAAACTGAATTTGCTTATATCTTAAAAAAGAAAACCGGCGAAACCTAGTTCGCATCTGCCCGACGAACCAGTTCCCTCCCGGAACACCTCTCCCTGTTCTTCCTTCTTTTCTTCCTGCGCGTTTTCTCTCATCCAATCCAATCCTACGATTACGAATCTTAATCAGTCTCTGCATTTTCTTAAAACCTAGTTTTATTCATCAAACGGAAAAATTGAGTTACACGTATATCAAATCGAATCTTAGAAGATGATGGTCTCGCCGGCGACAACGGCGCCGCAATCAAAGAAGCAGCAGCTTCCAGGGAATCTTCAGATACAGCCGTCGGATAATGATCGGAGCAGCACCGAACTTCGGGCACTGGACTGCAATCTTGCCTCTCTTTGTGACCACATTCAGATGGAGGGTTTTAACTCCGGCGTATTCTCTGACATCATTGTCCAGGCCATGGGCTCTACATATCTCCTTCATCGCCTCATCCTCTCCCGAAGCTCCTACTTCAGGAACATGCTTCATGGTCCATGGAAAGAAGCAGCTGCACCAAATTTAATCTTGCAGATTGATGATCCTAATGTTAACTCTGAGGCAATTACTACTGCCTTGGCCTATTTATATGGGCACCACCCAAAGCTTAATGATGATAATGCATTTCGGGTTCTTGCTGCTGCTTCTTTTCTTGACCTTCAGGATTTATGTGCAATCTGCACGGATTTCATCATTTCCGAGCTCTGGACCTCAAATTTTTTGGCATATCAGGTTTTTGCAGAGAGTCAGGATTATGGTATACATGGAGAACGTGTCAAAAATGCATGTTGGGGGTACCTTTGTCAGAGTGGAACCATGGAATTGAGAGAAGTGCTCCCAAAACTTTCTGCACAAACTTTACATACTTTGCTTACATCTGATGAACTCTGGGTTCCTGATGAGGAGAAAAGGTTTGAACTCGCTTTGTACGCATTACTTGCAAAAGGAGCCCTTGCCGAGGCAGATAGTTCTAAACTCGGAATTTCAGATTCTGAAATTGAAAAGAACCACAGTACTTTGTTAAAAGATAATTTTAATTATAGCACTATTGGTAAACAGCTTGTGGAGCTGGAAATGAAACAATTGAGCATCCAGGATAACTTAAATGAACATATGGCTGTCCAAAATATTCTTGTTGACCTTTCAGATTGCGTAGTTCCTGCTTCTAAGTCTGTGCAAGTGCGGCAAATACTCTCTCCTCAAACACTGCCTGATCCTAGATTTTCCAACATGATGCAGCAATCTTCTACCTTGAACTCTAGTTCTGACTCCAATTTAAACAGAGAATCTTGTTCTTATGTTGAAATTCGTAGTTGCAGCGAAGCAAACAAAATGTCAAATAGCCAGTTTGCCATGGAAGGGCCATCAGGAGATAGCTCTCGTTACCACCAAATAAATAATAATATATGGTCTCCTATTGATCACACGAGTAAGTTTTCTGCCATTCCTTCTAATAATGGGGTGAGTTCTATTGATTGGGGGAGGGGCAATTTGCCTTCATTATGGGGTGGCAGGACAGTAGGTAGAAGGCAAGTTAAAATTGCTAGAGGAAACTGTGGTGTACCCAGCGAAGAGTATGATGCATTTCATAATATTTTTGAAGGAGGCTCACTTTTGTATTGCAGTATGTCTTTTGAGGCATTGATTAACGTTCGAAAACAACTGGAGGAATTGGGTTTTCCTTGCAGAGCTGTGAATGATGGCCTTTGGCTCCAGATGCTTCTTTGTAAAAGGGTGCAAGAACTAACAGCTGATAACAGCAAAAACTGCTGCCTTACAAGCAGTTTTTGTGCGTGTAGACAACCATATGACTATTCACATGGAGTGAGTCCAATTGGTTACTATAGGCAAGAGCACGATAGAGGCAATTCTTCTGGAAGCATTGGGAATATTTACATAGCTGAGTCTCAAGCTGAAGGCCACGGTGCATCTGGTCCTGCACGTGTCCAAGTGAGGGCCCCCATTGATGGACTTGCTGGCATAGGGCGAGGGGCAACATACCTCCCTGGATCAGCATGGCTGCCAACACGCTATGTCTTTTCTCGTGTTCCTTTTGGGCTTGGCAATAGGAATTGCCAGCAGTCACTAGCTAATGATGACTCAGAAACTAGGGTTGATCTTAGTGGTGACCTATCAGGGGATGGATTGACTGCCCTTGTTGGTCTTAGTCAAGGGAGCAACTCTGGTCATGTACATGCTGAACAAACTGAAAGGGTATATGAAACAGACTTGCTGAGTAGGTTTGCTGGGACTGTATCTCATCCTAATGAACTCCCAGTTCAGATGCTAGGATCAGAGGAACATGGTCTTGGGATAGATTGTGAAAGCTCTGATGGCTCTATATCACTGGATTTCAAAACACCGCTGCGCGACTTTCCTCCTTTCCGCTTCGGGGTGGAGTTTGAAGATGTCCATCGGCTCAGTGATGGTCAGGTGAAACATTCTCCAGAAGTGTTCTATGCTGGATCGCTTTGGAAGGTCAGTGTGCAGGCTTTCAACGATGAAGATCTTCAAGGACGCCGCACTCTAGGATTATTTCTGCATAGGCGTAAAGCAGATGTGGCAGATTCTCTCAGAAAGGTTCACATATATGTCGACTCCCGCGAAAAGGTGACTGCTCGTTATCAGCTGATTTGCCCATCAAAGAGAGAAGTGATGGTGTTTGGGAGCTTTAAGCAGGCAGGAACGCTGTTGCCCAAAGCTCCAAAAGGATGGGGCTGGCGAACTGCACTACTGTTTGATGAACTCGGCGATCTCCTTCAGCGCGGTGCCCTGAGGGTTTCCGCTGTCGTGCAACTGGTTTGATGCACACATTATTGAGATTTGAAAAAGCAGGGGAGAGATTATTTTGTAAATATTTTTTTGGGGGACTAACAGCTAAAGTAAGTTATTTGGCTTCAAGCAGATTTTTATGTCTTAATCATACTTGTGCTGGCTTTTTTGATTAGAAAGAAGGGTAGATTAATACTTAGCTGATAGTTAGGTACTAAGGCATGGACGGTTTAAGCTTAGTTTAAGCCAAATAAAAGTTAAGCTGGCACGCTTAAGTAGCAAAGTGAGATAAAGTGTTTGATTTATAATAGAGAATCAACTTCAGGCTTAGCTTCGCCTCAACCTAAGCTTTCTTTGTGCGCTAGAGTCATTACATTTAATTTATTTGTTTTATTGGCTTAATGTCTTAAATCTAGGTTAAGCCCCTACCCAATATTCGCTTGAGTTAGTCCATTTAAATATATCTTTACAATTACATTAATTTTGAGTCTTTATAAATATGTATTGCAAAAGCC

Network for GWHGAAEX005047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	54	158	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.890
SRP064423	SRR2545915	Juvenile tuber	7.660
SRP108465	SRR5643513	five period of Gastrodia elata	11.920
	SRR5643514	five period of Gastrodia elata	13.940
	SRR5643515	five period of Gastrodia elata	12.000
	SRR5643524	five period of Gastrodia elata	13.080
	SRR5643525	five period of Gastrodia elata	13.230
	SRR5643528	five period of Gastrodia elata	14.120
	SRR5643658	five period of Gastrodia elata	19.530
	SRR5643659	five period of Gastrodia elata	9.470
	SRR5643660	five period of Gastrodia elata	10.460
	SRR5643661	five period of Gastrodia elata	10.420
	SRR5643662	five period of Gastrodia elata	10.650
	SRR5643663	five period of Gastrodia elata	12.040
	SRR5643664	five period of Gastrodia elata	11.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.490
SRP279888	Gastro	Gastrodia elata tuber	10.67
	Juven	Juvenile tuber	16.76
	Mother_Gastro	Mother tuber of Gastrodia elata	16.50
	Mother_Juven	Mother tuber of Juvenile	18.88