Detail information of GWHGAAEX005051/evm.TU.scaffold_158.100


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|258405873|ref|YP_003198615.1|5.00E-08RNP-1 like RNA-binding protein [Desulfohalobium retbaense DSM 5692]
KOGKOG01058.00E-90Alternative splicing factor ASF/SF2 (RRM superfamily)
nrgi|659099466|ref|XP_008450613.1|3.53E-101PREDICTED: pre-mRNA-splicing factor SF2 [Cucumis melo]
Swissprottr|Q9XFR5|SR30_ARATH5.00E-90Serine/arginine-rich splicing factor SR30
trEMBLtr|A0A0A0M1I3|A0A0A0M1I3_CUCSA5.00E-101Uncharacterized protein {ECO:0000313|EMBL:KGN66056.1}
TAIRAT1G091408.00E-90SERINE-ARGININE PROTEIN 30

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017022210072251576-
Transcript Sequence

Network for GWHGAAEX005051

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1411081.50E-17
PF00076.21RRM_11432052.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12890SFRS1, ASF, SF2 Spliceosome map03040
IL-17 signaling pathwaymap04657

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.830
SRR2545915Juvenile tuber14.260
SRP108465SRR5643513five period of Gastrodia elata38.330
SRR5643514five period of Gastrodia elata39.750
SRR5643515five period of Gastrodia elata38.400
SRR5643524five period of Gastrodia elata41.480
SRR5643525five period of Gastrodia elata19.970
SRR5643528five period of Gastrodia elata23.330
SRR5643658five period of Gastrodia elata52.800
SRR5643659five period of Gastrodia elata25.780
SRR5643660five period of Gastrodia elata29.410
SRR5643661five period of Gastrodia elata34.850
SRR5643662five period of Gastrodia elata24.350
SRR5643663five period of Gastrodia elata31.200
SRR5643664five period of Gastrodia elata28.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.950
SRR6049655Rhizomagastrodiae_C368-T10_good_115.670
SRR6049656Rhizomagastrodiae_C368-T07_good_120.180
SRR6049657Rhizomagastrodiae_C368-T07_good_124.020
SRR6049658Rhizomagastrodiae_C368-T04_good_125.620
SRR6049659Rhizomagastrodiae_C368-T04_good_122.650
SRR6049660Rhizomagastrodiae_C368-T01_good_125.180
SRR6049661Rhizomagastrodiae_C368-T04_good_119.240
SRR6049662Rhizomagastrodiae_C368-T01_good_122.870
SRR6049663Rhizomagastrodiae_C368-T01_good_122.660
SRR6049664Rhizomagastrodiae_C368-T10_good_121.890
SRR6049665Rhizomagastrodiae_C368-T10_good_121.890
SRP279888GastroGastrodia elata tuber 34.93
JuvenJuvenile tuber63.80
Mother_GastroMother tuber of Gastrodia elata 42.52
Mother_JuvenMother tuber of Juvenile 82.32