Gene detail

Detail information of GWHGAAEX005055/evm.TU.scaffold_158.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|479137869\|ref\|YP_007769301.1\|	2.00E-63	hydrogenases, Fe-only [Coprococcus catus GD/7]
KOG	KOG2439	6.00E-139	Nuclear architecture related protein
nr	gi\|743823970\|ref\|XP_010932657.1\|	0	PREDICTED: cytosolic Fe-S cluster assembly factor narfl-like [Elaeis guineensis]
trEMBL	tr\|D7U6R8\|D7U6R8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38438.3}
TAIR	HS11968051	6.00E-139	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000170	2277950	2325146	+

Transcript Sequence
>GWHTAAEX005055 AGTAATAGTTCGATCTAAACGGATTAAATTGGGCGACCGATATGATTAGGGCTATATATAAGCTTCTATCTCCGACCCTATAGCAAAGCACCGCCCTCGAGCATCCCTTATATTTTTCCCGATCGTCCCCTGACGAAAATAAACTCTGCCCTAATTCGCGAGGGCAGACCGTCGATTCTCTCTTATGACGGATTCCAATCATTTGAAACGCCACTGTTTTCCTTCTTAAATCTCTACTCTTCTTTCCCTTCCACACTTCCCTTCGACCTCCCATTCTCTTACCTCCTTTCTCACCGAACATCATTACTCTCACCGAATGCATCATCATCGTTGAGCCACAACTTGTCTCCTCTCACCATCGACTTCAACGCCCATTGATAGCGAGCACAACCAGTTGGGATCGACGCAACCCTGTATCTCTGTACGTCCTTTGCTTTATGAGTTGCCGATTTGTTGCGTTGAAACAAACGATATTGTCTCCGATCAAGAGTCTCATCGCCCCCTCGTCTGAATCTAGGCGGTGGTACTGCCGGGGCTGAAGTTGTTTGGCCGATTTTTTTTCTGTGTCATGTTCTTCTTGTGACCGATTAGGCACATAAGCTTTTATTACATAGCCATCCACTGCGGTACTGGTTTTTCTGGGCTCTTGGATTGTTTTGTTACTACGACTGTGAAAATGTCTCTCAAGTTTTCACCAGTGCTACGCTCTGCCGACCTCAATGACTTTATTGCACCGTCTCAAAATTGCATAGTCTCATTGAAGGGGCTTAAGACAAAGATTGACAAGAATGAATACTTGTTCAAGCCTTTTAGCAAGTCTTCATCTTCCGAGGTAGTCAAAGTTGAATTGAAAGATTGTTTAGCATGCAGTGGTTGCATAACTTCGGCTGAAACGGTTATGCTTGAGAAGCAAAGTTTAGATGAGTTTTATAGTCATATCAATTCAGAGAAGGCTGTTGTAGTTTCTCTGTCTCCTCAGTCAAGAGCATCACTAGCTGCCTATTTCAATCTCTCTCCTATTCAGGTTTTGAGAAAAGTTACTGCTCTTCTCAAATCTTTGGGAGTGAAGGCAGTGCATGATACAAGTTGCAGCCGGGACATCTCTCTTATAGAATCTTGCAATGAATTCATTTCAAGATACAAACAACATTACTTAGTTGGCAATGAAGAAAATGTTTCAAAGCTTCCCATGATTTCGTCTGCATGCCCTGGTTGGATATGCTATGCGGAAAAGACTCTTGGATCTTTTATTCTTCCATACATTTCCTCTGTGAAGAGCCCCCAACAAGTAATGGGAGCCACAATTAAACATCATATTTCAAAAAGGATGGGATGCTCGCCAGATAAAATCTTCCATGTCACTGTAATGCCTTGTTATGATAAAAAGTTAGAGGCTGCTCGGGATGATTTTGTTTTTTCGGTAGATAATAATGGAAGTGTTCTTGATGATGATGGTTCCGCTATGAAGATACCAGAGGTGGACATGGTTTTGACTTCTGGAGAGTTGTTGGATCTGATTCAGTCAAAATCAATTGATTTCAAGGCTTTGGCTGAAGATCATCTTGATAGATTGCTAACAAATGTTGATGATAATGGGATTCTTTATGGGGCTTCTGGTGGTTCAGGAGGTTATGCTGAGACAATTTTTCGCTATGCAGCTAAAATACTATTTGATACTGTCATTGAAGGTCCGCTTCAGTTTAAGACCATACGCAATTCAGATTTTCAGGAAGTAGTACTAGAGGTAGCTGGTAAAGTAGTTCTCAAATTTGCTCTTTGTTATGGATTTCGAAACTTACAGAATGTTGTACAAAAAATAAGCAAAGGAAAATCTGACTATCATTTCTTAGAAATAATGGCTTGTCCTTCTGGCTGTCTCAACGGTGGAGGACAGATCAAACCTGTGCCTGGCCAAACTGCAATGAATCTTATTCAACAGCTGGAGAATATATATATGCAAGATGTATTGATTGCCAGCCCTTTTGATAATCCCATCGTAAAGAACCTGTATGCAGAGTGGCTCGACCAGCCTGGTTCAGACAAAGCTAGAATGCTTTTGCACACACAGTACCACCCCGTTGCCAAGAGTATTGCCGCAGAACTGCACAATTGGTGATGCAATCTTCAATAATATCACAATCATTGAGGTTGATTTTATATGTTTTTATGTATAGAAAAAAATCATACTATCTCTTATAGTTAAGCACTAGAGAATAAACAAACACTTCTCAGCCATGAATTAGAAACTTTAGATGTGCTAGTATTATTATAGAAGCTTTCTGTATAGTTAAACAATTTTATGCAAAGTACTTATTCTGTATAACTGAATTTAACTCGTTCCTCTTGTTCTATTCATATATATTTTGATGTCCCTTAAAGAAATTTTCAAATCTATACAAAATTCAGAGCCACATGAAAAACGTACCTGTAATTTTGACAAAAGGGTTGCAACGTTAATGACTTTGCCTCTGTCACATGCTTAAGTTGTAACGTGTTCTGTGAATTCAATTCTAATTAGTTACATATTTGTATACTACTGAAACTTGCTCTCCCTTTCTGTGTATAAAGAGCTGAAGCTCATCTTTTCTCCCCATTAGTTTATGAGTATTGCT

Network for GWHGAAEX005055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02906.13	Fe_hyd_lg_C	92	404	4.20E-73
PF02256.16	Fe_hyd_SSU	420	467	1.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.760
SRP064423	SRR2545915	Juvenile tuber	37.980
SRP108465	SRR5643513	five period of Gastrodia elata	31.790
	SRR5643514	five period of Gastrodia elata	31.650
	SRR5643515	five period of Gastrodia elata	29.430
	SRR5643524	five period of Gastrodia elata	32.260
	SRR5643525	five period of Gastrodia elata	37.250
	SRR5643528	five period of Gastrodia elata	32.720
	SRR5643658	five period of Gastrodia elata	29.650
	SRR5643659	five period of Gastrodia elata	38.590
	SRR5643660	five period of Gastrodia elata	37.340
	SRR5643661	five period of Gastrodia elata	38.100
	SRR5643662	five period of Gastrodia elata	37.820
	SRR5643663	five period of Gastrodia elata	33.990
	SRR5643664	five period of Gastrodia elata	31.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.900
SRP279888	Gastro	Gastrodia elata tuber	29.44
	Juven	Juvenile tuber	29.22
	Mother_Gastro	Mother tuber of Gastrodia elata	49.21
	Mother_Juven	Mother tuber of Juvenile	49.05