Detail information of GWHGAAEX005062/evm.TU.scaffold_159.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325289885|ref|YP_004266066.1|1.00E-46DNA mismatch repair protein mutL [Syntrophobotulus glycolicus DSM 8271]
KOGKOG19786.00E-154DNA mismatch repair protein - MLH2/PMS1/Pms2 family
nrgi|743768323|ref|XP_010914440.1|0PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Elaeis guineensis]
Swissprottr|Q941I6|PMS1_ARATH0DNA mismatch repair protein PMS1
trEMBLtr|I1IB41|I1IB41_BRADI0Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G47472.1}
TAIRAT4G024606.00E-154DNA mismatch repair protein, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000158273113361501-
Transcript Sequence

Network for GWHGAAEX005062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13589.5HATPase_c_3491501.10E-12
PF01119.18DNA_mis_repair2413592.90E-23
PF08676.10MutL_C7218781.80E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10858PMS2 Mismatch repair map03430
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006298Biological Processmismatch repair
GO:0005524Molecular FunctionATP binding
GO:0030983Molecular Functionmismatched DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.310
SRR2545915Juvenile tuber22.990
SRP108465SRR5643513five period of Gastrodia elata7.810
SRR5643514five period of Gastrodia elata8.750
SRR5643515five period of Gastrodia elata8.880
SRR5643524five period of Gastrodia elata6.580
SRR5643525five period of Gastrodia elata5.080
SRR5643528five period of Gastrodia elata5.220
SRR5643658five period of Gastrodia elata5.870
SRR5643659five period of Gastrodia elata10.210
SRR5643660five period of Gastrodia elata11.380
SRR5643661five period of Gastrodia elata8.950
SRR5643662five period of Gastrodia elata9.320
SRR5643663five period of Gastrodia elata9.680
SRR5643664five period of Gastrodia elata10.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.760
SRR6049655Rhizomagastrodiae_C368-T10_good_19.480
SRR6049656Rhizomagastrodiae_C368-T07_good_111.820
SRR6049657Rhizomagastrodiae_C368-T07_good_116.660
SRR6049658Rhizomagastrodiae_C368-T04_good_123.700
SRR6049659Rhizomagastrodiae_C368-T04_good_125.590
SRR6049660Rhizomagastrodiae_C368-T01_good_117.100
SRR6049661Rhizomagastrodiae_C368-T04_good_120.760
SRR6049662Rhizomagastrodiae_C368-T01_good_19.770
SRR6049663Rhizomagastrodiae_C368-T01_good_112.410
SRR6049664Rhizomagastrodiae_C368-T10_good_18.220
SRR6049665Rhizomagastrodiae_C368-T10_good_18.220
SRP279888GastroGastrodia elata tuber 13.28
JuvenJuvenile tuber18.01
Mother_GastroMother tuber of Gastrodia elata 12.52
Mother_JuvenMother tuber of Juvenile 14.54