Gene detail

Detail information of GWHGAAEX005064/evm.TU.scaffold_159.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302348751\|ref\|YP_003816389.1\|	2.00E-56	AAA family ATPase [Acidilobus saccharovorans 345-15]
KOG	KOG0737	0	AAA+-type ATPase
nr	gi\|672171350\|ref\|XP_008805746.1\|	0	PREDICTED: uncharacterized protein LOC103718614 isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	7.00E-62	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|C5Y7H4\|C5Y7H4_SORBI	0	Putative uncharacterized protein Sb05g026170 {ECO:0000313\|EMBL:EES10219.1}
TAIR	AT1G02890_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000158	946172	998238	+

Transcript Sequence
>GWHTAAEX005064 ACATAACATCCGCCGACTAGTCCCCACTGTTTTTTCTCCCATATTTTTTCCATCTCCCTTTCCTCGGCAAAACGAAGCCATGGTGGCGACGAGGAGTTCGGCTTCTTCGAAACGTTCAAATTCTTCTCCGCCGGCTTCTTGTTCGAAAACCAAGCGCTCAAAGGGGGAGGAGGCGACAGCATCGTTGACTAAACATTGCCCGAATCCAAAGGACCTCGCTGCAGCTTGCGAGGTTAGGCAGCCATCGGGAGATCTACATGCGGATCTCGTTTTTGATGTTTCTACTAATCTGGAGGATAAACGGGCAGAAGTCGGCACGGCCGAAAGTTCGACAATTAATTTTTCTCCCAGAGAGACGGAGCAATTGATGAATATACTGCCTACCTTGGAACTTCCGAAACTTAAAGGGAAGGCTTGGCCGCAGAAGACAGCCTGGGCCAAGCTCATATCGAAGTGCTCTCAGGGTGTTATCGTAAATGGAATTCAGTATGGAACCAGATCTGGGGACTCATCAACTTTTGCTGGAGCATCAATATTGGCATCTTTATCTAATCCTACTAGAAAAAGTGAGGCCACACGAACATTAGCATCCAATGGCGAAAATGTTCAGGAAGGACTTCGAGGTGCCTCTTTTCCTCCTGCTTCCATTGTATCAGGCTCTATCCATGGATCTGATTGCGATTTCCAATTGAGGGATAATACTGATCCTAATGGGGTGGCTGTTACTGATGGCAATAAGACTACTGCTGCTGTACCAGTTGATCTAGCATCTAGCTTGGGTGTTGATGAATATTTTGATGCAGAATTGGCAAAGAGATCTGGTACAAATTTCGAATTGAGGCCACTTCTACGGATGCTTGAAAAATCTTCTAATGCTGAACTGGATTTGAGCGGCAATCTTTTCAGAACATCTGAAGGTCAAAGGGAGCTCCAGAAAGATCTAGAAGGCGTAGCAGTTAATTTAACCAGTTCTAGATCACAGACATTCAAGGAGCGTCTTAAACATGGGATTCTTAGTTCTTGTGAGATACAAGTTTCTTTTGAAAACTTTCCTTACTATTTGAGTGAAAATACAAAAAATGCTCTCTTATCATGTGCATATATACATCTGGAACACAAGGAATTTGCAAAATATTCTACAAACATTTCATCCTTAAACCCGCAAATTCTACTTTCTGGTCCTTCAGGATCTGAAATATATCAAGAAACTTTGACAAAGGCACTGGCTAAGCAATACGATGTTAGATTGCTTATAGTTGATTCTTTGATGTTGCCGGGTGTGTCATTATCAAAGGATTCAGAATCTCTTAAGGATGGCAGGACCGAGAAATCTGGTGGCATTACTAAGCAGAGATCTGCATTGACTGATACTGTTCATCATAGGCGACCTGCGTCTAGTGTAGAGGCTGATATTGTAGGAACGTCTAGCTTAAATTACCAATCCTTACCAAAGCAGGAGTCCTCTACAGCATCTTCAAAAAGTTACACATTTAAAGAAGGTGATAGAGTGAAGTATGTAGGTCAGATGCGTTCGTCTGCATTACCATTTCCATCCCAGAAGGGTCCGCATCATGGGTTTCGTGGTAAAGTAATGCTAGCGTTTGAAGAAAATGGATTATCCAAAGTTGGGGTGAGATTTGATAGGCAGATAGTTGAAGGCAATGATCTTGGAGGGCTTTGCGAAGAGGATCATGGGTTCTTTTGTAGTGCTGACATGCTTCGATTGGATTCTTCTGGAGGGGATGATTCAGAAAAGCTTGCTATCAATGAGTTAATAGAGGTTGTTATTGAAGAAAGTAAAAATGGGCCTCTTATAGTTTTCTTGAAGGATGTAGAAAAATCTATGGCTGGGGGTGTAGAATCATATCTATCTTTCAAGAACAAACTTGAATCACTTCCTCCTGGAGTTTTGTTAATTGGCTCTCATATACAAATAGATAATCGTAAAGAGAAGTCACATCCTGGTGGACTTCTTTTCACAAAGTTCGGAAGCAGTCAAACAGCTCTGCTTGATTTTGCCTTTCCGGATAACCTCAGCAGAATGCACGAAAGAACAAAGGAAATACCCAAGGCAATGAAACACTTGACTAGAGTCTTTCCAAACAAAGTTTCCATTCAACTTCCACAAGATGAAGCTTTACTTTTGAGTTGGAAGCAACAGTTGGACCTTGATGTTGAAACGCTTAAAGCTCAATCCAATAATTCGAGTATCCAATCTTTTCTAAACCGAAATGGGCTTGAGTGCAATGATCTTGAAAAATTATACATAAGGGATCAAACTCTTAACAATGAATGTGTTGATAAAATAGTTGGCTTTGCTCTTAGCCATCATTTCAAGTACAATAAAGAGCGGATTTATCTCAAGGATGCTAAGATTGTACTCTCCAGTGAGAGCATCATGCATGGACTTAGCATGCTTCAAAGCATGCAGTGTGATATGAAAAGTTCTAAAAAATCACTCAAGGATGTGGTTACAGAAAATGAGTTCGAGAAGAGGCTTTTGGCTGATGTTATTCCACCTAATGAAATTGGGGTTAGTTTCGACGACATTGGAGCTTTGGAGCAAGTAAAAGAGACATTGAAGGAATTGGTGATGCTTCCTTTGCAGAGACCAGAATTGTTTAGCAAAGGACAATTGACTAAGCCTTGCAAGGGAATTCTACTCTTTGGTCCGCCAGGGACAGGAAAAACGATGCTTGCTAAAGCTGTTGCCACTGAAGCAGGGGCAAATTTTATCAATATTTCAATGTCGAGCATCACATCAAAGTGGTTTGGCGAAGGTGAAAAGTATGTCAAGGCTGTTTTCTCTTTAGCAAGTAAAATAGCTCCTAGCGTTGTTTTTGTTGATGAGGTTGACAGCATGTTGGGTAGAAGGGAAAATCCAGGAGAGCATGAAGCTATGCGCAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGCACAAAAGATAAAGAACGTGTATTAGTTCTTGGAGCTACAAATAGGCCTTTCGATCTTGATGAGGCTGTCATAAGGAGACTGCCACGGAGATTGATGGTGAATTTACCTGATGCATCAAATAGAGAAAAGATTCTGAAAGTCATACTAGCCAAAGAAGAACTGGGAGTAGATATTGATTTTGAAACAGTCGCAAATATGACTGACGGATATTCTGGAAGTGACTTGAAGAATCTTTGTGTTACTGCTGCACACCGGCCTATTCGAGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGATCAAGCACTTGAAGAAGGAAAGCCTTCGCCACCTTTGTGTAGTGGGGTGGATATTCGCCCGTTAAACTTGAATGACCTTAAATATGCACATGAGCAGGTGTGTGCTAGTGTCTCATCAGAATCGACAAATATGAGCGAGCTTCTACAGTGGAATGAGCTGTATGGAGAGGGCGGATCGAGAAAGAAGAAGGCACTCAGCTATTTCATGTAGAAAATTCCACCCACAACATTGCGATGTAAAGACTTGAGAACCGACTGAGAAGTACCTCATTTGCTGGTGAATAATATATATATATATATATATA

Network for GWHGAAEX005064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	860	989	1.60E-36

Protein Sequence

>GWHPAAEX005064
MVATRSSASSKRSNSSPPASCSKTKRSKGEEATASLTKHCPNPKDLAAACEVRQPSGDLHADLVFDVSTNLEDKRAEVGTAESSTINFSPRETEQLMNILPTLELPKLKGKAWPQKTAWAKLISKCSQGVIVNGIQYGTRSGDSSTFAGASILASLSNPTRKSEATRTLASNGENVQEGLRGASFPPASIVSGSIHGSDCDFQLRDNTDPNGVAVTDGNKTTAAVPVDLASSLGVDEYFDAELAKRSGTNFELRPLLRMLEKSSNAELDLSGNLFRTSEGQRELQKDLEGVAVNLTSSRSQTFKERLKHGILSSCEIQVSFENFPYYLSENTKNALLSCAYIHLEHKEFAKYSTNISSLNPQILLSGPSGSEIYQETLTKALAKQYDVRLLIVDSLMLPGVSLSKDSESLKDGRTEKSGGITKQRSALTDTVHHRRPASSVEADIVGTSSLNYQSLPKQESSTASSKSYTFKEGDRVKYVGQMRSSALPFPSQKGPHHGFRGKVMLAFEENGLSKVGVRFDRQIVEGNDLGGLCEEDHGFFCSADMLRLDSSGGDDSEKLAINELIEVVIEESKNGPLIVFLKDVEKSMAGGVESYLSFKNKLESLPPGVLLIGSHIQIDNRKEKSHPGGLLFTKFGSSQTALLDFAFPDNLSRMHERTKEIPKAMKHLTRVFPNKVSIQLPQDEALLLSWKQQLDLDVETLKAQSNNSSIQSFLNRNGLECNDLEKLYIRDQTLNNECVDKIVGFALSHHFKYNKERIYLKDAKIVLSSESIMHGLSMLQSMQCDMKSSKKSLKDVVTENEFEKRLLADVIPPNEIGVSFDDIGALEQVKETLKELVMLPLQRPELFSKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLGATNRPFDLDEAVIRRLPRRLMVNLPDASNREKILKVILAKEELGVDIDFETVANMTDGYSGSDLKNLCVTAAHRPIREILEKEKKERDQALEEGKPSPPLCSGVDIRPLNLNDLKYAHEQVCASVSSESTNMSELLQWNELYGEGGSRKKKALSYFM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	196.340
SRP064423	SRR2545915	Juvenile tuber	136.040
SRP108465	SRR5643513	five period of Gastrodia elata	63.350
	SRR5643514	five period of Gastrodia elata	56.270
	SRR5643515	five period of Gastrodia elata	57.770
	SRR5643524	five period of Gastrodia elata	56.450
	SRR5643525	five period of Gastrodia elata	54.460
	SRR5643528	five period of Gastrodia elata	54.410
	SRR5643658	five period of Gastrodia elata	77.510
	SRR5643659	five period of Gastrodia elata	56.860
	SRR5643660	five period of Gastrodia elata	69.020
	SRR5643661	five period of Gastrodia elata	51.580
	SRR5643662	five period of Gastrodia elata	58.090
	SRR5643663	five period of Gastrodia elata	61.520
	SRR5643664	five period of Gastrodia elata	68.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	107.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	79.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	91.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	142.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	155.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	196.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	130.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	146.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	70.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	96.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	69.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	69.300
SRP279888	Gastro	Gastrodia elata tuber	81.45
	Juven	Juvenile tuber	90.99
	Mother_Gastro	Mother tuber of Gastrodia elata	70.48
	Mother_Juven	Mother tuber of Juvenile	106.60