Detail information of GWHGAAEX005070/evm.TU.scaffold_159.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG48351.00E-50DNA-binding protein C1D involved in regulation of double-strand break repair
nrgi|672113416|ref|XP_008810832.1|4.02E-73PREDICTED: nuclear nucleic acid-binding protein C1D [Phoenix dactylifera]
trEMBLtr|A0A061GIF8|A0A061GIF8_THECC2.00E-64Sas10/Utp3/C1D family {ECO:0000313|EMBL:EOY29326.1}
TAIRAT5G250801.00E-50Sas10/Utp3/C1D family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015816848421698400-
Transcript Sequence

Network for GWHGAAEX005070

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12592C1D, LRP1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms85.040
SRR2545915Juvenile tuber94.830
SRP108465SRR5643513five period of Gastrodia elata50.820
SRR5643514five period of Gastrodia elata57.430
SRR5643515five period of Gastrodia elata49.870
SRR5643524five period of Gastrodia elata60.300
SRR5643525five period of Gastrodia elata66.760
SRR5643528five period of Gastrodia elata54.410
SRR5643658five period of Gastrodia elata63.550
SRR5643659five period of Gastrodia elata61.180
SRR5643660five period of Gastrodia elata61.670
SRR5643661five period of Gastrodia elata66.300
SRR5643662five period of Gastrodia elata61.120
SRR5643663five period of Gastrodia elata69.680
SRR5643664five period of Gastrodia elata66.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_161.510
SRR6049655Rhizomagastrodiae_C368-T10_good_188.600
SRR6049656Rhizomagastrodiae_C368-T07_good_163.050
SRR6049657Rhizomagastrodiae_C368-T07_good_155.700
SRR6049658Rhizomagastrodiae_C368-T04_good_167.990
SRR6049659Rhizomagastrodiae_C368-T04_good_164.780
SRR6049660Rhizomagastrodiae_C368-T01_good_161.350
SRR6049661Rhizomagastrodiae_C368-T04_good_163.950
SRR6049662Rhizomagastrodiae_C368-T01_good_168.080
SRR6049663Rhizomagastrodiae_C368-T01_good_168.150
SRR6049664Rhizomagastrodiae_C368-T10_good_168.300
SRR6049665Rhizomagastrodiae_C368-T10_good_168.300
SRP279888GastroGastrodia elata tuber 88.69
JuvenJuvenile tuber79.50
Mother_GastroMother tuber of Gastrodia elata 74.98
Mother_JuvenMother tuber of Juvenile 47.40