Gene detail

Detail information of GWHGAAEX005072/evm.TU.scaffold_16.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	3.00E-57	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|694995730\|ref\|XP_009390137.1\|	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LVP0\|Y5639_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g63930 (Precursor)
trEMBL	tr\|A0A067KAY3\|A0A067KAY3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33381.1}
TAIR	AT5G63930	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	24648	52495	+

Transcript Sequence
>GWHTAAEX005072 GGCCACTCACTCGCCACTTCATGCTTCGAGAGCTACAACGTACCAAAACGAGAGGAGCATTATTTCTTCTTCCATTCCAATTAACAATTATATTGTTTACCGCAAGAAGAAAGTTAGGAGTAGAAGAGAAAGGGGGAAAGAAGCGATGAGATAAACGGGCAAGGGAAAGAAAGTGGGGGTGGCGGACCTGTCGATTATGACAGAAAAGTTGAAAGAGATAGAAAAAATTCAAACCTTGAAAGCGTGCCTGCCTGCCATTGAGCTCTCTATCTCTCTCCCGTGAACTTCTCGTGGTTGTTTTCGATTCGATTATTTTTTGGGATTCGCCTTTTCCTGCATATTTTTATTTGGATACACAGGAACGAGAGGCAAGGGGCGGGGGAGGTAAATGAAAGACTGGATTGGAAGCACGCGTTCAGGAAAAGGATAGGAAGAAGATTCTCAATGTGATGAAAAGGAGAGTGGGGAAATGCCGAATACAAGTGCCATTTTTATCGAATGCGGCTTGGAATCCAGGAAAGGCCACTTTTTTCAGATCTATTTCTGAGTTTTTGTAGTTGATGGTCGGCTCACCCAGGCTATGACGAGGCTTTGATGGAGAGGAAGTGGTTCTGAAAGATCCTGAAATGAAGTGAAATTTGAATAAAATAATCTGCATCTTTCTTTTTAATTGTTTGTTTATGATTGGGTGGGAATCTTCAAATCCCAAAAGAGCTGTGAGTTTTGGATTCTTGTAGATTTCATTTGCATTTTAGCCTTGGAAAAGCTGAGCAATGGTTTATTTCCAAAGAAGAAAGAGAATCTATTATGCTATGATTCATAAAAAAAGGTTGAAAGTGATTTTCTGGGACTTGACAACAGCTTTTTTTAATGCTTTTGGAACATGGAGGAAATGAGTTGTACTTTGAAGGAGTAGTTTAAAGCTTATCACTGGAAGAACTTAATTTCTTATGTATTGATAGTTAGCTTGATGAATAAATCATCAAATTTCTTGATTTCTTCCTTAAACGTAGTAGTGCTATTGGCTTTTCTACTTATTCATGGTTCTAAAGGGCTCAACATGGAAGGGCAATTTCTCCTGAATATAAAGAACAACCTGAATGATAATTTGAGGCACCTTGAGAGTTGGAAGGCTGGGGATGAAACTCCTTGTGGATGGAAAGGTGTGAACTGTTCAAGCGACTATGATCCAGTGGTTATCTCTCTTGATCTCAATTCATTGAACTTATCAGGCAACCTCTCCTCTAGCATTTGTGGCTTGGTGCATTTATCTTATCTTGACCTCTCCTTCAATAGCTTCTCAGGAAGCATACCTCCAGAAATTGGAAACTGTTCCAAGCTCGAAATATTGTACCTAAACAACAATAAATTTGAAGGTCAAATCCCTCCTGAATTTGGCAAACTATCACTTTTGATAAACTGCAACATTTGTAATAATAAACTTTCGGGATCTCTTCCGGAGGAGATGGGTAACATGTCCTCCCTTGTAGAGTTATTAGCATACACCAATAATTTTACAGGGCCATTACCCCGTTCCATTGGAAAGCTCAAGTACTTAGCAACATTCAGAGCTGGACAAAACATGATTTCAGGAATGATTCCTGCAGAAATTGGTGGGTGTGAGAGCTTGGAGTTTCTTGGCCTTGCTCAGAACCAACTAGGAGGGGAGGTCCCTAAAGAGCTTGGGATGCTGAGGTGTCTTAGAGAATTGATTCTTTGGGACAACCAATTGTCTGGAATCATACCGAAGGAGTTGGGAAATTGCACAAGCCTTGCAACCCTTGCGCTTTACCAGAATACATTGGTAGGTGGAATCCCTATTGAGATTGGCCACTTGAAGAATCTAAAGAATTTATACCTTTATAGGAATGAATTGAATGGGACTATACCCAAGGAGATGGGAAACCTTACTCATGCGAAGGAAATTGATTTTTCAGAGAATTTTTTGGTTGGGGAAATTCCATTGGAGCTAAGTAACTTGAAGAGTTTGTGTCTGCTGTATCTATTTCAGAATAAGCTTACTGGTTTCATCCCTCCCGAGCTATGTGAGCTGAAGAACTTGACAAAGCTTGATCTCTCAATCAATTTTTTCACAGGGCCAATTCCAGTTGGTTTGCAGTATTTGACTGAGTTGCTTCAGTTGCAACTTTTTAGCAACATGCTTTCAGGTCCTATTCCTCAAGAACTTGGCACATATAGCCGCCTTTGGGTGGTGGATTTTTCGGACAACAATCTTACTGGGCCGATACCGAGAAATATATGCAGTCATTCTAATCTAATAATGTTGAATCTATGGTCTAACAAGCTCACTGGTAGAATTCCAAGCGGAGTTGTATATTGCAAATCATTGGTGCAACTTCGCCTTGGAGATAACGGCCTTGTAGGCAGTTTTCCTGCTGATTTATGCAAGATTGCAAATTTGATCATTATTGAGTTGGATGAGAACAGGTTCACTGGTCCTATCCCTCCTGAGATAGGGAACTGCAAAGCATTGCAAAGACTTGCTCTCCCGGTCAATTTTTTTATGTCTAAGCTTCCAGCTGAGATTGGAAATCTATCACAGTTGGTTTTCCTTAACATCTCATCTAACCAAATGGTAGGAAGAGTTCCACCTCAGATTGTTAGCTGCAAGAGCCTTCAAAGGCTTGATCTCAGCCTGAACGGGTTTATGGGAGAATTACCAAATGAGCTTGGAACTCTCCTGCAGTTAGAGCTGCTTATTCTTTCTGATAACAAGCTCACAGGAAAGATACCTTCCATTTTGGGAAACCTTTCCCATTTAACTGAATTGCAGATGGGTGGCAATCTATTTTCTGGTGGAATTCCAAGTGAATTGGGCCAACTTTCAAGTCTGCAGATTGCCTTGAATCTCAGCTATAACAATCTGTCAGAAAATTTACCTCCTGAGCTTGGAAACCTTGCTCTATTGGAGTATCTTTTTCTCAACAACAACCACTTAACTGGTGAAATTCCTTTCTCTTTTGCCAACTTATCCAGTTTGCTTGGCTTGAATGTCTCATACAATGATCTCACTGGACCTATTCCTTCACTGTCGCTTCTTCGAAATATGGCCTTGAGCAGCTTCATAGGAAATAAGGCGCTTTGTGGCGAACCACTTAACAGCTGCAGCATACCTCTGATTCCTTCGTTTTCTCCAGTTTCAACATCAACCAGTAATCATGTTAGTTTGATTGTTGCTATAATTTCTGCTGTAATTGGAGGAGTTTCGCTTGTTCTTATAGCTGTTATCTTACATTTTATAAGAAAACCTATTGAGAATATTCCTTCCGTGCAAGATAGGGAGCTTTCTTCTGCGGAATCTAGCATGTGTTTAAGCCCAAAGGAAGGATTTACTTTTAGTGACTTGATTGCAGCCACAAACAATTTTGATGAAGGTTGTGTTATTGGGAGGGGGGCATGCGGAACAGTTTATAGAGCTGTTATGAGTACTGGATTGGTTGTTGCTGTGAAGAAACTTGTATCTAATAGAGAGGGAAGTACTGTAGAAAATAGCTTTCGTGCTGAAATTTTGACACTTGGGAAGGTTAGGCATCGGAATATTGTCAAGTTGTATGGTTACTGTTATCATCAAGGCTGGAATCTTCTCCTCTATGAGTATATGTCGAGAGGGAGCCTCGGTGAGGTGCTTCATGGAAAATCTTTTGATCTGGATTGGGACACAAGATTTATGATAGCTTTTGGAGCTGCTCAGGGGCTCTCATATCTGCACCATGATTGCAAGCCACACATCATTCACAGAGATATCAAATCAAATAACATTTTGCTGAATGATAATTTTGAAGCGCATGTTGGTGATTTTGGATTGGCAAAGGTGATTGACATGCCACAATCAAAATCAATGTCGGCTGTTGCTGGATCCTATGGTTATATTGCACCAGAATATGCATACACAATGAAAGTTACAGAAAAATGCGACATTTATAGCTACGGTGTTGTCCTTCTGGAGCTGCTCACTGGAAGAACACCAGTGCAGCCTCTGGAACAAGGAGGAGATCTTGTTACATGGGTCCGGAATTACATAAAGAGCTATTCTTTGAACTCTGGAGTTCTTGATAAAAGCTTGAATCTAGAAGATCCTGATGTCGTTGATCACATGTTAATTGTTCTGAAAATTGCTCTGCTGTGCACGAATTTGTCTCCACTTGATAGACCTTCGATGTGGCAGGTCATTCTGATGCTCCTGGAGTCCAAGGAGAGACTGCCGCAGAGCTCCTCCTCCTCACCACTCTCGGGCATTTCATCGAAGGAGGATAATTCCTGAATTTCAATACATTTAATCAATTTCATATGATTTATTGTCAATATTGCTGTTTTAGTTGAGTAGGCCTATGCTGTAATTTTTTCAATAATTTTTTCCATTTGTTTTGTGGTTATTTGTAATATCATTATCTTTCATTAAATGTCCAGCTTCTGTATTTGGAGCTAATTTGAGCATTATTGTGGAAAATTTGCTCTGCAATTGTGCCGTTAGTGAATTTGTTTCTAAAAGGGGACTGTAAAAATGTTTTTTTTAAACACATTAAAAAATGAAAGAAACATGATACACTATGTATCTGTCATCACTGATTTGA

Network for GWHGAAEX005072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	30	69	5.60E-10
PF00069.24	Pkinase	810	1070	1.10E-46

Protein Sequence

>GWHPAAEX005072
MNKSSNFLISSLNVVVLLAFLLIHGSKGLNMEGQFLLNIKNNLNDNLRHLESWKAGDETPCGWKGVNCSSDYDPVVISLDLNSLNLSGNLSSSICGLVHLSYLDLSFNSFSGSIPPEIGNCSKLEILYLNNNKFEGQIPPEFGKLSLLINCNICNNKLSGSLPEEMGNMSSLVELLAYTNNFTGPLPRSIGKLKYLATFRAGQNMISGMIPAEIGGCESLEFLGLAQNQLGGEVPKELGMLRCLRELILWDNQLSGIIPKELGNCTSLATLALYQNTLVGGIPIEIGHLKNLKNLYLYRNELNGTIPKEMGNLTHAKEIDFSENFLVGEIPLELSNLKSLCLLYLFQNKLTGFIPPELCELKNLTKLDLSINFFTGPIPVGLQYLTELLQLQLFSNMLSGPIPQELGTYSRLWVVDFSDNNLTGPIPRNICSHSNLIMLNLWSNKLTGRIPSGVVYCKSLVQLRLGDNGLVGSFPADLCKIANLIIIELDENRFTGPIPPEIGNCKALQRLALPVNFFMSKLPAEIGNLSQLVFLNISSNQMVGRVPPQIVSCKSLQRLDLSLNGFMGELPNELGTLLQLELLILSDNKLTGKIPSILGNLSHLTELQMGGNLFSGGIPSELGQLSSLQIALNLSYNNLSENLPPELGNLALLEYLFLNNNHLTGEIPFSFANLSSLLGLNVSYNDLTGPIPSLSLLRNMALSSFIGNKALCGEPLNSCSIPLIPSFSPVSTSTSNHVSLIVAIISAVIGGVSLVLIAVILHFIRKPIENIPSVQDRELSSAESSMCLSPKEGFTFSDLIAATNNFDEGCVIGRGACGTVYRAVMSTGLVVAVKKLVSNREGSTVENSFRAEILTLGKVRHRNIVKLYGYCYHQGWNLLLYEYMSRGSLGEVLHGKSFDLDWDTRFMIAFGAAQGLSYLHHDCKPHIIHRDIKSNNILLNDNFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRNYIKSYSLNSGVLDKSLNLEDPDVVDHMLIVLKIALLCTNLSPLDRPSMWQVILMLLESKERLPQSSSSSPLSGISSKEDNS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.720
SRP064423	SRR2545915	Juvenile tuber	9.410
SRP108465	SRR5643513	five period of Gastrodia elata	17.590
	SRR5643514	five period of Gastrodia elata	15.960
	SRR5643515	five period of Gastrodia elata	17.470
	SRR5643524	five period of Gastrodia elata	16.680
	SRR5643525	five period of Gastrodia elata	9.560
	SRR5643528	five period of Gastrodia elata	9.880
	SRR5643658	five period of Gastrodia elata	18.650
	SRR5643659	five period of Gastrodia elata	4.960
	SRR5643660	five period of Gastrodia elata	3.350
	SRR5643661	five period of Gastrodia elata	4.300
	SRR5643662	five period of Gastrodia elata	2.700
	SRR5643663	five period of Gastrodia elata	4.280
	SRR5643664	five period of Gastrodia elata	2.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.510
SRP279888	Gastro	Gastrodia elata tuber	1.80
	Juven	Juvenile tuber	4.80
	Mother_Gastro	Mother tuber of Gastrodia elata	1.47
	Mother_Juven	Mother tuber of Juvenile	1.97