Detail information of GWHGAAEX005077/evm.TU.scaffold_16.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 1.00E-37 | GATA-4/5/6 transcription factors |
| nr | gi|695073749|ref|XP_009384051.1| | 8.81E-52 | PREDICTED: GATA transcription factor 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LAU9|GATA1_ARATH | 4.00E-38 | GATA transcription factor 1 |
| trEMBL | tr|M0RSZ4|M0RSZ4_MUSAM | 9.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P17140_001} |
| TAIR | AT3G24050 | 1.00E-37 | GATA transcription factor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 211022 | 212364 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005077
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 176 | 209 | 3.20E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.180 |
| SRR2545915 | Juvenile tuber | 0.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.450 |
| SRR5643514 | five period of Gastrodia elata | 10.060 | |
| SRR5643515 | five period of Gastrodia elata | 3.180 | |
| SRR5643524 | five period of Gastrodia elata | 7.810 | |
| SRR5643525 | five period of Gastrodia elata | 7.960 | |
| SRR5643528 | five period of Gastrodia elata | 8.520 | |
| SRR5643658 | five period of Gastrodia elata | 4.810 | |
| SRR5643659 | five period of Gastrodia elata | 5.640 | |
| SRR5643660 | five period of Gastrodia elata | 6.990 | |
| SRR5643661 | five period of Gastrodia elata | 9.090 | |
| SRR5643662 | five period of Gastrodia elata | 6.090 | |
| SRR5643663 | five period of Gastrodia elata | 4.950 | |
| SRR5643664 | five period of Gastrodia elata | 7.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.88 |
| Juven | Juvenile tuber | 4.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.08 | |
| Mother_Juven | Mother tuber of Juvenile | 2.00 |