Detail information of GWHGAAEX005080/evm.TU.scaffold_16.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113476828|ref|YP_722889.1| | 8.00E-38 | thioredoxin [Trichodesmium erythraeum IMS101] |
| KOG | KOG0910 | 2.00E-47 | Thioredoxin-like protein |
| nr | gi|475653387|gb|AGI60278.1| | 8.74E-88 | m-type thioredoxin protein 1 [Dendrobium catenatum] |
| Swissprot | tr|Q6H7E4|TRXM1_ORYSJ | 1.00E-53 | Thioredoxin M1, chloroplastic (Precursor) |
| trEMBL | tr|V5JD67|V5JD67_9ASPA | 3.00E-88 | M-type thioredoxin protein 1 {ECO:0000313|EMBL:AGI60278.1} |
| TAIR | AT3G15360 | 2.00E-47 | thioredoxin M-type 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 279962 | 322433 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005080
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 81 | 182 | 5.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03671 | trxA | NOD-like receptor signaling pathway | map04621 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006662 | Biological Process | glycerol ether metabolic process |
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.600 |
| SRR2545915 | Juvenile tuber | 51.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.720 |
| SRR5643514 | five period of Gastrodia elata | 59.880 | |
| SRR5643515 | five period of Gastrodia elata | 43.280 | |
| SRR5643524 | five period of Gastrodia elata | 60.560 | |
| SRR5643525 | five period of Gastrodia elata | 40.380 | |
| SRR5643528 | five period of Gastrodia elata | 45.670 | |
| SRR5643658 | five period of Gastrodia elata | 37.070 | |
| SRR5643659 | five period of Gastrodia elata | 34.330 | |
| SRR5643660 | five period of Gastrodia elata | 37.590 | |
| SRR5643661 | five period of Gastrodia elata | 40.430 | |
| SRR5643662 | five period of Gastrodia elata | 39.330 | |
| SRR5643663 | five period of Gastrodia elata | 36.860 | |
| SRR5643664 | five period of Gastrodia elata | 35.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 73.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 68.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 80.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 85.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 82.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 86.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 86.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.77 |
| Juven | Juvenile tuber | 59.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.46 | |
| Mother_Juven | Mother tuber of Juvenile | 55.80 |