Detail information of GWHGAAEX005085/evm.TU.scaffold_16.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|260753501|ref|YP_003226394.1| | 1.00E-32 | glutaredoxin-like protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] |
| KOG | KOG0911 | 0 | Glutaredoxin-related protein |
| nr | gi|743776179|ref|XP_010918490.1| | 0 | PREDICTED: monothiol glutaredoxin-S11 [Elaeis guineensis] |
| Swissprot | tr|Q0IWL9|GRS11_ORYSJ | 0 | Monothiol glutaredoxin-S11 |
| trEMBL | tr|F6HRW7|F6HRW7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57425.1} |
| TAIR | AT4G04950 | 0 | thioredoxin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 354146 | 379582 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005085
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 10 | 102 | 8.00E-15 |
| PF00462.23 | Glutaredoxin | 164 | 227 | 2.50E-16 |
| PF00462.23 | Glutaredoxin | 285 | 349 | 3.30E-13 |
| PF00462.23 | Glutaredoxin | 392 | 456 | 4.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
| GO:0009055 | Molecular Function | electron carrier activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.930 |
| SRR2545915 | Juvenile tuber | 33.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.750 |
| SRR5643514 | five period of Gastrodia elata | 60.780 | |
| SRR5643515 | five period of Gastrodia elata | 47.560 | |
| SRR5643524 | five period of Gastrodia elata | 51.680 | |
| SRR5643525 | five period of Gastrodia elata | 132.460 | |
| SRR5643528 | five period of Gastrodia elata | 177.380 | |
| SRR5643658 | five period of Gastrodia elata | 112.850 | |
| SRR5643659 | five period of Gastrodia elata | 47.190 | |
| SRR5643660 | five period of Gastrodia elata | 41.580 | |
| SRR5643661 | five period of Gastrodia elata | 43.570 | |
| SRR5643662 | five period of Gastrodia elata | 41.900 | |
| SRR5643663 | five period of Gastrodia elata | 42.080 | |
| SRR5643664 | five period of Gastrodia elata | 40.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 61.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 56.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 64.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 97.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 76.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 86.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 86.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.33 |
| Juven | Juvenile tuber | 120.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 81.87 | |
| Mother_Juven | Mother tuber of Juvenile | 146.54 |