Detail information of GWHGAAEX005088/evm.TU.scaffold_16.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158334857|ref|YP_001516029.1|2.00E-22sphingosine kinase 2 [Acaryochloris marina MBIC11017]
KOGKOG11160Sphingosine kinase, involved in sphingolipid metabolism
nrgi|672180979|ref|XP_008810694.1|0PREDICTED: sphingoid long-chain bases kinase 1-like [Phoenix dactylifera]
Swissprottr|Q9LRB0|LCBK1_ARATH0Sphingoid long-chain bases kinase 1
trEMBLtr|M0SSH4|M0SSH4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27120_001}
TAIRAT5G234500long-chain base (LCB) kinase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000024492180522032+
Transcript Sequence

Network for GWHGAAEX005088

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00781.23DAGK_cat2143452.80E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016301Molecular Functionkinase activity
GO:0003951Molecular FunctionNAD+ kinase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.120
SRR2545915Juvenile tuber28.580
SRP108465SRR5643513five period of Gastrodia elata20.520
SRR5643514five period of Gastrodia elata20.250
SRR5643515five period of Gastrodia elata17.000
SRR5643524five period of Gastrodia elata19.430
SRR5643525five period of Gastrodia elata20.840
SRR5643528five period of Gastrodia elata18.490
SRR5643658five period of Gastrodia elata25.930
SRR5643659five period of Gastrodia elata15.800
SRR5643660five period of Gastrodia elata16.460
SRR5643661five period of Gastrodia elata16.360
SRR5643662five period of Gastrodia elata17.850
SRR5643663five period of Gastrodia elata17.910
SRR5643664five period of Gastrodia elata20.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.550
SRR6049655Rhizomagastrodiae_C368-T10_good_125.640
SRR6049656Rhizomagastrodiae_C368-T07_good_124.530
SRR6049657Rhizomagastrodiae_C368-T07_good_125.960
SRR6049658Rhizomagastrodiae_C368-T04_good_125.760
SRR6049659Rhizomagastrodiae_C368-T04_good_130.120
SRR6049660Rhizomagastrodiae_C368-T01_good_127.480
SRR6049661Rhizomagastrodiae_C368-T04_good_126.910
SRR6049662Rhizomagastrodiae_C368-T01_good_125.580
SRR6049663Rhizomagastrodiae_C368-T01_good_126.830
SRR6049664Rhizomagastrodiae_C368-T10_good_121.580
SRR6049665Rhizomagastrodiae_C368-T10_good_121.580
SRP279888GastroGastrodia elata tuber 17.77
JuvenJuvenile tuber28.94
Mother_GastroMother tuber of Gastrodia elata 19.36
Mother_JuvenMother tuber of Juvenile 19.93