Detail information of GWHGAAEX005090/evm.TU.scaffold_16.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428304542|ref|YP_007141367.1|060 kDa chaperonin [Crinalium epipsammum PCC 9333]
KOGKOG03560Mitochondrial chaperonin, Cpn60/Hsp60p
nrgi|743853295|ref|XP_010940621.1|0PREDICTED: ruBisCO large subunit-binding protein subunit alpha-like isoform X1 [Elaeis guineensis]
Swissprottr|P08926|RUBA_PEA0RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Precursor)
trEMBLtr|M0RUD5|M0RUD5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22050_001}
TAIRAT2G280000chaperonin-60alpha

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000024633819644009+
Transcript Sequence

Network for GWHGAAEX005090

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP1595611.10E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042026Biological Processprotein refolding
GO:0006457Biological Processprotein folding
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms150.880
SRR2545915Juvenile tuber412.710
SRP108465SRR5643513five period of Gastrodia elata129.530
SRR5643514five period of Gastrodia elata92.740
SRR5643515five period of Gastrodia elata127.280
SRR5643524five period of Gastrodia elata87.470
SRR5643525five period of Gastrodia elata108.780
SRR5643528five period of Gastrodia elata131.140
SRR5643658five period of Gastrodia elata45.470
SRR5643659five period of Gastrodia elata364.670
SRR5643660five period of Gastrodia elata375.950
SRR5643661five period of Gastrodia elata363.880
SRR5643662five period of Gastrodia elata486.320
SRR5643663five period of Gastrodia elata502.200
SRR5643664five period of Gastrodia elata462.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1297.370
SRR6049655Rhizomagastrodiae_C368-T10_good_1150.760
SRR6049656Rhizomagastrodiae_C368-T07_good_1259.300
SRR6049657Rhizomagastrodiae_C368-T07_good_1225.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1208.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1169.210
SRR6049660Rhizomagastrodiae_C368-T01_good_1160.890
SRR6049661Rhizomagastrodiae_C368-T04_good_1252.590
SRR6049662Rhizomagastrodiae_C368-T01_good_1243.900
SRR6049663Rhizomagastrodiae_C368-T01_good_1159.580
SRR6049664Rhizomagastrodiae_C368-T10_good_1156.070
SRR6049665Rhizomagastrodiae_C368-T10_good_1156.070
SRP279888GastroGastrodia elata tuber 454.96
JuvenJuvenile tuber175.44
Mother_GastroMother tuber of Gastrodia elata 42.01
Mother_JuvenMother tuber of Juvenile 102.23