Detail information of GWHGAAEX005093/evm.TU.scaffold_16.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1488 | 0 | Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) |
| nr | gi|643719794|gb|KDP30469.1| | 0 | hypothetical protein JCGZ_16148 [Jatropha curcas] |
| Swissprot | tr|Q9ZW02|PUM3_ARATH | 0 | Pumilio homolog 3 |
| trEMBL | tr|A0A067KF32|A0A067KF32_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP30469.1} |
| TAIR | AT2G29140 | 0 | pumilio 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 678623 | 725443 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005093
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07990.11 | NABP | 376 | 549 | 8.70E-50 |
| PF00806.18 | PUF | 551 | 584 | 2.10E-06 |
| PF00806.18 | PUF | 589 | 619 | 1.70E-07 |
| PF00806.18 | PUF | 623 | 655 | 2.00E-06 |
| PF00806.18 | PUF | 659 | 691 | 2.80E-06 |
| PF00806.18 | PUF | 698 | 725 | 2.90E-07 |
| PF00806.18 | PUF | 731 | 765 | 5.20E-10 |
| PF00806.18 | PUF | 767 | 801 | 1.20E-06 |
| PF00806.18 | PUF | 815 | 843 | 3.60E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.550 |
| SRR2545915 | Juvenile tuber | 26.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.180 |
| SRR5643514 | five period of Gastrodia elata | 15.090 | |
| SRR5643515 | five period of Gastrodia elata | 16.690 | |
| SRR5643524 | five period of Gastrodia elata | 14.410 | |
| SRR5643525 | five period of Gastrodia elata | 16.790 | |
| SRR5643528 | five period of Gastrodia elata | 11.010 | |
| SRR5643658 | five period of Gastrodia elata | 17.980 | |
| SRR5643659 | five period of Gastrodia elata | 18.740 | |
| SRR5643660 | five period of Gastrodia elata | 20.390 | |
| SRR5643661 | five period of Gastrodia elata | 18.290 | |
| SRR5643662 | five period of Gastrodia elata | 15.630 | |
| SRR5643663 | five period of Gastrodia elata | 15.290 | |
| SRR5643664 | five period of Gastrodia elata | 16.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.51 |
| Juven | Juvenile tuber | 21.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.50 | |
| Mother_Juven | Mother tuber of Juvenile | 22.37 |