Gene detail

Detail information of GWHGAAEX005099/evm.TU.scaffold_16.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392398606\|ref\|YP_006435207.1\|	5.00E-22	multidrug ABC transporter ATPase [Flexibacter litoralis DSM 6794]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|672196722\|ref\|XP_008776879.1\|	0	PREDICTED: ABC transporter G family member 3 [Phoenix dactylifera]
Swissprot	tr\|Q9ZUU9\|AB3G_ARATH	0	ABC transporter G family member 3
trEMBL	tr\|M0RSY4\|M0RSY4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P17040_001}
TAIR	AT2G28070	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	932700	965439	+

Transcript Sequence
>GWHTAAEX005099 CTAGAAACTTGCAAAAATCTCGAATTTTATGACTGTGAGCAGTTATTTATATCATTGACACGGCTTAGTAAAAGGATGACTCAGCGAAATGCCCGTATAAACAAAGGAGATTTTTTCAGTCACTGACTCTCCTCTTTTCCCTCGCAGCTGGGTACACAACCCGAGAAAGTCTCTGATTTACCGTCATTTTTAACGTCCCGGCGGGATTTTTGGCTACACATATCTTTTGCAGCTTTGGCTAGAGGAAAGAAGGCATTTTTAGTTCTACGATAGCTTCTTCACCTAGCCAATACGAGAAAGAGGATTCGAGTTTTTGAGACAAGTATGAGGGTGTACCTTTTGTCTCTAGTAAAAGCGTGTCAATGTAGACGTGGCTGTTAATGGTTGTTATTTAAATGAATATTTCAATTATGATAGAGCTATGCTAAAACAGTAGCATTCTGCTTGCCCGAGTTGTGCATACAAGTTTATGTTAATGGATATTTACAGTGTCTTGATTTGAAATCTGAGGAAGTATAACATTAGAATGGAAGATATACAGTCTTACTCTGATAATTATAGATCTTCCTCATCTTCAGCAAGCAGTCCTGTAAGTAAGGCACATTCAGGTGCCTTTTTCTATTTGAGGAAACCTGGTTCTCTAAGAAAGCCAATTTCATTTGAAGACTCACCTGATTGGGATGATACTGAAGTTGATCCCCAGATTGACGAGGGGGAAGATTCTATCCATATTGCAACCACTACAGCCTCACCGTCCCTTTCAAAGGTTAATAGTGGGTCATTGCCATCTCCATCAATTTTGGAAGCGTCTTCGGCTGTGTCAAGAAAGATTGCTGGGGCGTCCATAGTTTGGAAGGACCTTTGTGTTTCCATAAAAGAAAAGAGGAAGTATTCCGACAAGGTAATCAAGAGTTCAAACGGTTATGCTTTGCCGGGGACACTTACTGTTATAATGGGGCCTGCGCGTTCAGGGAAGTCAACTCTGCTAAGGGCAATTGCAGGTAAAGTACGTTCTCCAGCAAGGCTCTATGGTGAAGTTTTTGTCAATGGGGCAAAATTTTTTATGCCATATGGCTCTTATGGATATGTTGATCGAAAAGTTGTGTTGATAGAATCTCTCACTGTCAGAGAGTTTTTATATTACTCAGCGCTTCTACAACTTCCTGGTTCCTTATCTCAGAAAAAGGCTCTTGTAGAGGATGCCATTTCTGCAATGTCTTTAGGGGATTATGCCAACAAACTCATAGGTGGTCACTGTTTTGTGAAGCGTCTTCCTTGCGGTGAAAGGAGGCGTGTCAGTATCGCTAGAGAGCTTATAACAAGACCACGTATTTTATTCATTGATGAACCACTTTATCATCTTGACAGTGTATCTGCACTACTTTTGATGGTCACATTGAAAAAGCTTGCAAGCACAGGATGCACTCTCATTTTTACCATGTACCAAAGCAGCACAGAAGTTTTTGGTCTCTTTGACAGAATATGCTTACTTTCTAATGGAAATACATTATTTTTTGGAGAAACTCTGGCTTGTTTGCAGCATTTCTCCAATGCTGGATTTCCTTGCCCAATCATGCAAAGCCCATCAGATCACTTTCTGCGTGCAATTAATACTGATTTTGATAGGATCATAGCCATGTGTAAATATTTACAGGATGACAATGGAGAATTTTCATCTGTTAACATGGATACAGCTGTTGCAATTCGAACACTTGAAGCAACATATAAATCATCAGTGGATTCGGCTACTGTTGAATCGATGATACGAAGACTTACAGCAAAGGAAGGCCCTCATTTGAAAAGTAAGGGAAGACCAAGTGATGTGATGCGAGTTGCTGTGCTAATGTGGCGTTTTTTATTGACCATGTCTAGAGAGTGGAAATATTTCTGGATTCGTTTTTTGCTGTACATTTTGCTCACACTCTCAATTGGTACAATGTTTTCCAACATCGGTCACTCTTTATCATCTGTTATGGTTCGGGTCTCCGCAATATTTGTCTTTGTTTCAGTTTTGTTGCTTCTAAGTATTGCTGGATTGCCTGCCCATTTAAATGAAATCGAGATATTCATGCATGAGGAGTCAAATCAACATTCTGGAGCTATGATTTTTCTTCTTGGTCATTTCCTTGCTAGCATTCCTTTTATCTTCCTCATCTCCATTTCCTCCACTCTACTCTTCTATTTTCTAGGTGGTCTCCGGAATGAATTCAACCTGTTGATGTACTTTGTCCTTAACATTTTCATGTGCCTTTTGGCAAATGAAGGGCTGATAATGGTTGTTGCTTATATTTGGTTTGAGGTCTTTTCATGCCTCTTAATCTTGTTGCTTCTTTATGTTCTAATGATGCTAGTAGCTGGTTATTTCAGGATCAGAAATGATCTTCCCGATCCAATTTGGAAGTACCCGTTATCTTATGTTGCATTCCACACTTACTCCATTCAGGGTCTTCTGGAGAACGAGTACATGGGAACATCATATGCAGTTGGAGAGGTGAGGGCCATTTCAGGCTGGCAGGCTGTTCGGGGTTCCTATGAAATATCTGCTTCCAGGAATGCAAAGTGGAAGAATTTGCTTGCGCTGTTTGTAATGGCTATTGGATACAGAATCCTCTTGTTTCTTCTTTTTCATCTCAGGGCAAGGAGGAGCTCTGTGAGCTGCCCTTCTATTTTCTGCTGTGGCTGGTGGCTGCGGATTTTTTCAAAAAAGGCAGGCTGAATTTTAGAAACAGTTTTTAAATCTTCCTTTGTGTATATATTTGAAAATTGAGCTGGAAAGCTATTTTTTATAATGGAGGGGGAGTAACTGTGGATGGGGGATTTGCAGAATAGGCTAGAAGCTGTTTTTTCTTAAATTTAAATTTATTAGTTTTTTTTTTTGGAAGAAGTTAATGATGTGGTTGTTGAAATTTGAATCCTTGATTTGTCAAGAGTTTAAATTCAAAGATCTTAACAATTGTATCGTATTTTATTTGGCTGTCTGTTTTTGTTCTTTAGATAAAAGCTGTTATTGCCATTAT

Network for GWHGAAEX005099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	136	276	1.40E-15
PF01061.23	ABC2_membrane	437	646	2.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.430
SRP064423	SRR2545915	Juvenile tuber	19.510
SRP108465	SRR5643513	five period of Gastrodia elata	15.460
	SRR5643514	five period of Gastrodia elata	23.130
	SRR5643515	five period of Gastrodia elata	15.450
	SRR5643524	five period of Gastrodia elata	17.160
	SRR5643525	five period of Gastrodia elata	12.480
	SRR5643528	five period of Gastrodia elata	8.760
	SRR5643658	five period of Gastrodia elata	11.910
	SRR5643659	five period of Gastrodia elata	14.850
	SRR5643660	five period of Gastrodia elata	16.440
	SRR5643661	five period of Gastrodia elata	15.090
	SRR5643662	five period of Gastrodia elata	13.140
	SRR5643663	five period of Gastrodia elata	16.370
	SRR5643664	five period of Gastrodia elata	14.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.000
SRP279888	Gastro	Gastrodia elata tuber	17.37
	Juven	Juvenile tuber	18.47
	Mother_Gastro	Mother tuber of Gastrodia elata	8.10
	Mother_Juven	Mother tuber of Juvenile	8.63