Detail information of GWHGAAEX005100/evm.TU.scaffold_16.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|3.00E-25hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00927.00E-111GTPase Rab5/YPT51 and related small G protein superfamily GTPases
nrgi|747074600|ref|XP_011084296.1|1.30E-116PREDICTED: ras-related protein RABF1 [Sesamum indicum]
Swissprottr|Q9CB01|RABF1_ARATH8.00E-111Ras-related protein RABF1
trEMBLtr|A0A059BHW6|A0A059BHW6_EUCGR5.00E-116Uncharacterized protein {ECO:0000313|EMBL:KCW65446.1}
TAIRAT3G548407.00E-111Ras-related small GTP-binding family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000024966332996456-
Transcript Sequence

Network for GWHGAAEX005100

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras341885.40E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.750
SRR2545915Juvenile tuber64.420
SRP108465SRR5643513five period of Gastrodia elata44.640
SRR5643514five period of Gastrodia elata56.750
SRR5643515five period of Gastrodia elata55.320
SRR5643524five period of Gastrodia elata58.710
SRR5643525five period of Gastrodia elata81.050
SRR5643528five period of Gastrodia elata116.380
SRR5643658five period of Gastrodia elata98.740
SRR5643659five period of Gastrodia elata36.140
SRR5643660five period of Gastrodia elata29.800
SRR5643661five period of Gastrodia elata39.290
SRR5643662five period of Gastrodia elata32.340
SRR5643663five period of Gastrodia elata32.010
SRR5643664five period of Gastrodia elata30.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_170.100
SRR6049655Rhizomagastrodiae_C368-T10_good_133.860
SRR6049656Rhizomagastrodiae_C368-T07_good_165.850
SRR6049657Rhizomagastrodiae_C368-T07_good_165.460
SRR6049658Rhizomagastrodiae_C368-T04_good_167.730
SRR6049659Rhizomagastrodiae_C368-T04_good_183.830
SRR6049660Rhizomagastrodiae_C368-T01_good_164.260
SRR6049661Rhizomagastrodiae_C368-T04_good_188.200
SRR6049662Rhizomagastrodiae_C368-T01_good_177.370
SRR6049663Rhizomagastrodiae_C368-T01_good_182.720
SRR6049664Rhizomagastrodiae_C368-T10_good_178.160
SRR6049665Rhizomagastrodiae_C368-T10_good_178.160
SRP279888GastroGastrodia elata tuber 66.61
JuvenJuvenile tuber52.33
Mother_GastroMother tuber of Gastrodia elata 144.38
Mother_JuvenMother tuber of Juvenile 92.60