Detail information of GWHGAAEX005101/evm.TU.scaffold_16.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1603 | 3.00E-47 | Copper chaperone |
| nr | gi|672161465|ref|XP_008800548.1| | 1.27E-83 | PREDICTED: uncharacterized protein LOC103714883 [Phoenix dactylifera] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 1.00E-10 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|M0SXE7|M0SXE7_MUSAM | 4.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10680_001} |
| trEMBL | tr|M0SXE7|M0SXE7_MUSAM | 3.00E-06 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10680_001} |
| TAIR | AT5G03380 | 3.00E-47 | Heavy metal transport/detoxification superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 1169280 | 1173686 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005101
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00403.25 | HMA | 49 | 106 | 2.40E-14 |
| PF00403.25 | HMA | 156 | 211 | 1.40E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.160 |
| SRR2545915 | Juvenile tuber | 102.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 78.160 |
| SRR5643514 | five period of Gastrodia elata | 87.150 | |
| SRR5643515 | five period of Gastrodia elata | 112.570 | |
| SRR5643524 | five period of Gastrodia elata | 105.660 | |
| SRR5643525 | five period of Gastrodia elata | 76.850 | |
| SRR5643528 | five period of Gastrodia elata | 288.230 | |
| SRR5643658 | five period of Gastrodia elata | 63.900 | |
| SRR5643659 | five period of Gastrodia elata | 133.700 | |
| SRR5643660 | five period of Gastrodia elata | 161.790 | |
| SRR5643661 | five period of Gastrodia elata | 137.080 | |
| SRR5643662 | five period of Gastrodia elata | 176.050 | |
| SRR5643663 | five period of Gastrodia elata | 102.720 | |
| SRR5643664 | five period of Gastrodia elata | 162.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 97.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 87.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 113.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 93.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 80.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 79.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 148.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 76.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 113.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 164.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 108.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 108.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.04 |
| Juven | Juvenile tuber | 153.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 592.83 | |
| Mother_Juven | Mother tuber of Juvenile | 613.66 |