Detail information of GWHGAAEX005104/evm.TU.scaffold_16.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392396718|ref|YP_006433319.1| | 1.00E-30 | methylase involved in ubiquinone/menaquinone biosynthesis [Flexibacter litoralis DSM 6794] |
| KOG | KOG3178 | 7.00E-40 | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases |
| nr | gi|225446487|ref|XP_002278149.1| | 9.22E-67 | PREDICTED: trans-resveratrol di-O-methyltransferase [Vitis vinifera] |
| Swissprot | tr|Q9LEL6|6OMT_COPJA | 1.00E-62 | (RS)-norcoclaurine 6-O-methyltransferase |
| trEMBL | tr|F6H5H4|F6H5H4_VITVI | 3.00E-67 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47326.1} |
| TAIR | AT5G54160 | 7.00E-40 | O-methyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 1344137 | 1347805 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005104
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08100.10 | Dimerisation | 40 | 85 | 2.70E-12 |
| PF00891.17 | Methyltransf_2 | 179 | 376 | 1.10E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0008171 | Molecular Function | O-methyltransferase activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.590 |
| SRR2545915 | Juvenile tuber | 20.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 170.270 |
| SRR5643514 | five period of Gastrodia elata | 134.550 | |
| SRR5643515 | five period of Gastrodia elata | 114.340 | |
| SRR5643524 | five period of Gastrodia elata | 147.510 | |
| SRR5643525 | five period of Gastrodia elata | 2.730 | |
| SRR5643528 | five period of Gastrodia elata | 16.080 | |
| SRR5643658 | five period of Gastrodia elata | 3.190 | |
| SRR5643659 | five period of Gastrodia elata | 13.400 | |
| SRR5643660 | five period of Gastrodia elata | 32.010 | |
| SRR5643661 | five period of Gastrodia elata | 27.530 | |
| SRR5643662 | five period of Gastrodia elata | 19.450 | |
| SRR5643663 | five period of Gastrodia elata | 6.780 | |
| SRR5643664 | five period of Gastrodia elata | 11.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 84.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 170.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 138.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 178.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 153.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 232.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 232.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.69 |
| Juven | Juvenile tuber | 96.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 107.47 | |
| Mother_Juven | Mother tuber of Juvenile | 152.04 |