Detail information of GWHGAAEX005105/evm.TU.scaffold_16.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268317750|ref|YP_003291469.1|6.00E-122AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
KOGKOG11760Acyl-CoA synthetase
nrgi|672177539|ref|XP_008808867.1|0PREDICTED: 4-coumarate--CoA ligase-like 1 [Phoenix dactylifera]
Swissprottr|Q9M0X9|4CLL7_ARATH04-coumarate--CoA ligase-like 7
trEMBLtr|A0A059DAI7|A0A059DAI7_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW87479.1}
TAIRAT4G051600AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002413888801429646-
Transcript Sequence

Network for GWHGAAEX005105

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding364441.10E-101
PF13193.5AMP-binding_C4535282.10E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.700
SRR2545915Juvenile tuber39.220
SRP108465SRR5643513five period of Gastrodia elata70.990
SRR5643514five period of Gastrodia elata71.410
SRR5643515five period of Gastrodia elata56.590
SRR5643524five period of Gastrodia elata61.670
SRR5643525five period of Gastrodia elata55.650
SRR5643528five period of Gastrodia elata58.280
SRR5643658five period of Gastrodia elata42.180
SRR5643659five period of Gastrodia elata37.720
SRR5643660five period of Gastrodia elata44.560
SRR5643661five period of Gastrodia elata36.500
SRR5643662five period of Gastrodia elata42.600
SRR5643663five period of Gastrodia elata44.530
SRR5643664five period of Gastrodia elata50.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.980
SRR6049655Rhizomagastrodiae_C368-T10_good_1129.150
SRR6049656Rhizomagastrodiae_C368-T07_good_193.550
SRR6049657Rhizomagastrodiae_C368-T07_good_197.680
SRR6049658Rhizomagastrodiae_C368-T04_good_1108.090
SRR6049659Rhizomagastrodiae_C368-T04_good_1118.750
SRR6049660Rhizomagastrodiae_C368-T01_good_1102.770
SRR6049661Rhizomagastrodiae_C368-T04_good_197.790
SRR6049662Rhizomagastrodiae_C368-T01_good_184.650
SRR6049663Rhizomagastrodiae_C368-T01_good_1108.380
SRR6049664Rhizomagastrodiae_C368-T10_good_1116.480
SRR6049665Rhizomagastrodiae_C368-T10_good_1116.480
SRP279888GastroGastrodia elata tuber 48.04
JuvenJuvenile tuber119.86
Mother_GastroMother tuber of Gastrodia elata 79.49
Mother_JuvenMother tuber of Juvenile 102.90