Detail information of GWHGAAEX005106/evm.TU.scaffold_16.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338732201|ref|YP_004670674.1| | 4.00E-60 | RNA pseudouridine synthase [Simkania negevensis Z] |
| nr | gi|672177524|ref|XP_008808861.1| | 6.53E-152 | PREDICTED: uncharacterized protein LOC103720767 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0SZZ5|M0SZZ5_MUSAM | 2.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19660_001} |
| TAIR | AT2G39140 | 2.00E-75 | pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 1486544 | 1494431 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005106
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01479.24 | S4 | 141 | 183 | 1.80E-10 |
| PF00849.21 | PseudoU_synth_2 | 204 | 345 | 1.90E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0009451 | Biological Process | RNA modification |
| GO:0016866 | Molecular Function | intramolecular transferase activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.990 |
| SRR2545915 | Juvenile tuber | 7.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.790 |
| SRR5643514 | five period of Gastrodia elata | 6.440 | |
| SRR5643515 | five period of Gastrodia elata | 6.760 | |
| SRR5643524 | five period of Gastrodia elata | 5.550 | |
| SRR5643525 | five period of Gastrodia elata | 3.130 | |
| SRR5643528 | five period of Gastrodia elata | 2.420 | |
| SRR5643658 | five period of Gastrodia elata | 1.610 | |
| SRR5643659 | five period of Gastrodia elata | 7.280 | |
| SRR5643660 | five period of Gastrodia elata | 7.050 | |
| SRR5643661 | five period of Gastrodia elata | 9.310 | |
| SRR5643662 | five period of Gastrodia elata | 10.050 | |
| SRR5643663 | five period of Gastrodia elata | 9.470 | |
| SRR5643664 | five period of Gastrodia elata | 9.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.33 |
| Juven | Juvenile tuber | 4.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.35 | |
| Mother_Juven | Mother tuber of Juvenile | 3.96 |