Detail information of GWHGAAEX005109/evm.TU.scaffold_16.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|13470594|ref|NP_102163.1| | 2.00E-72 | ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] |
| KOG | KOG0344 | 0 | ATP-dependent RNA helicase |
| nr | gi|743858652|ref|XP_010942412.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 57 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q5K5B6|RH57_ORYSJ | 0 | DEAD-box ATP-dependent RNA helicase 57 |
| trEMBL | tr|F6HR01|F6HR01_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57050.1} |
| TAIR | AT3G09720 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 1529044 | 1545940 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005109
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 156 | 322 | 1.10E-38 |
| PF00271.30 | Helicase_C | 362 | 466 | 1.50E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.650 |
| SRR2545915 | Juvenile tuber | 15.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.690 |
| SRR5643514 | five period of Gastrodia elata | 17.020 | |
| SRR5643515 | five period of Gastrodia elata | 15.060 | |
| SRR5643524 | five period of Gastrodia elata | 16.310 | |
| SRR5643525 | five period of Gastrodia elata | 13.880 | |
| SRR5643528 | five period of Gastrodia elata | 12.810 | |
| SRR5643658 | five period of Gastrodia elata | 11.560 | |
| SRR5643659 | five period of Gastrodia elata | 20.870 | |
| SRR5643660 | five period of Gastrodia elata | 19.210 | |
| SRR5643661 | five period of Gastrodia elata | 16.840 | |
| SRR5643662 | five period of Gastrodia elata | 17.210 | |
| SRR5643663 | five period of Gastrodia elata | 16.610 | |
| SRR5643664 | five period of Gastrodia elata | 14.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.17 |
| Juven | Juvenile tuber | 12.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.28 | |
| Mother_Juven | Mother tuber of Juvenile | 7.83 |