Gene detail

Detail information of GWHGAAEX005114/evm.TU.scaffold_16.53

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1874	KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4
nr	gi\|672128840\|ref\|XP_008787912.1\|	PREDICTED: THO complex subunit 2-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|F4IAT2\|THOC2_ARATH	THO complex subunit 2
trEMBL	tr\|I1K5H3\|I1K5H3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34330.1}
TAIR	AT1G24706	THO2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	1684888	1766798	+

Transcript Sequence
>GWHTAAEX005114 AATGGATTCAAACCAACATTCGAACATATTTGCTATCATTGGCGTCTTCTTGCCATTTTTTCAGATACTGGGTGCAGAGCTCTCGCGCCCTCGAACCCAGTCGAAGCCGCTCAGCTTCAAAACCTAGGGTTCTACGCCCTACCTTCTGCAGCGCAACGCTCTGTCATCTCCTCCCATCTTCGTTCCAATCGGCATGTCATTCCAGTGCCCGGAGTTCAAATTCGTTACAGACGGATGCTTGCATGAATGGAAGGCCTCGAACAGCAATTTCAAACTCCCGGAGCCGGTCTCTATGACCAGGTTTCTGTACGAACTATGTTGGGCTATGATTCGTGGAGATTTACCATTCCAAAAATGTAAATTGGCTCTGGATTCGGCTGCGTTCTCTGAAGAAAAGAAAGAAGAGATAGGTTCCACGCTGGCTGATATTATTGCTCACATGGGACAAGATCTAACAATGTCTATCGAGCATCGCAATCGTCTTTCAAAACTGGCAAAATGGTTTGCTGAATCTTCATTAGTTCCATTGAGGCTCTTTCAGGAACGCTGCGAGGAAGAATTTTTATGGGAATCTGAACTGTCTAAAGTAAAAGCTCATGATTTGAAGTCGAAAGAGGTCAGAATAAACACGCGCCTTTTGTATCAACAAACAAAATTTAACCTCCTCAGGGAGGAAAGTGAGGGATATTCCAAGCTGGTGACTCTACTCTGTAAAAATCCATCAGATGCGGTCAGCCAAAATACATCTTCTGGTATAATTAGCATAATTAAGTCATTAATTGGACACTTTGATTTGGATCCAAATCGTGTCTTTGACATTGTTTTGGAATGTTTTGAACTTAACCCCGAAAACGACATATTCTACAATCTTATACCTATTTTTCCCAAGTCACATGCTTCCCAAATTCTGGGATTTAAGTTCCAATATTATCAAAGAATGGAAGTTAGCTCTCCTGTACCACCTGGGCTTTATCGGCTTACTGCATTGTTGGTAAAAGCAAACTTTATTGATCTTGATAGTATATGTGCCCATTTACTTCCGAAGGATGAGGAAGCATTTGAGCATTATGATACACTCATTGCAAAACGATTTGAAGAAGCAAACAATATTGGCAAAATTAATTTAGCTGCTATTGGAAAAGATCTCATGGATGATGAGAAGCAAGATATTACAGTAGATTTGTTTACAGCACTGGACATGGAGAGTGATTCTGCTCTGGAGCATGCTGCTGAGGTTGAAAATAATCAAAGCTTTGGTCTTCTCATTGGTTTTCTTTCAATAGATGACTGGTATCATGCTCAAGTTCTATTTGATCGTCTCTCTCATCTGAACCCCGTTGCACACATTCTTGTTTGTGAGGGATTATTTAGGGCAATAGAGAAGAGCATCTCCTCCTCTTATGATATTGTTTGCCAAATGCATCTTCAAAACATTGGCAATTCCAATACCGTTAACTTGGATATCACAGAATCAATAAAGATATCAACTTCAACTCCTGTTGATCTTTCAAGGGATCTTTTTCAAATGCTTGCTGCTGCTGGTCCTTACCTACACCGTGATACCATTCTTTTGCAGAAGGTATGCCGAGTGTTAAGAGGATACTATCTTTCTGCTCAGGAATCTGCAATTGTTGCTGGAAACATGTTTTCTAATGTTTCTGGGGATGATTGTCGAAGGCATCCTTGTTTTCGGGCAAAGGAAGCTAGGCTGAGAGTTGAGGAGGCTCTAGGTGCTTGTTTGCTTCCATCATTGCAGTTAGTCCCTGCAAATCCTGCTGTGGGGAAGGAGATATGGGAAGTTCTGTCCCTCCTTCCATATGAGGCTCGTTATCGTTTGTATGGAGAATGGGAAAAGGTTGATGAAAACATTCCCATGGTTCTTGCTGCTAGGCAAATTGCAAAGTTGGACACTCGTAGAATATTGAAAAGACTTGCTAAGGAAAACTTAAAGCAACTAGGTCGCATGGTGGCCAAGCTTGCTCATTCTAATCCAATGACTGTTCTTCGAACTATTGTTCATCAGATTGAGGCATACAAGGATATGATAGCACCTGTTGTAGATGCTTTCAAATATTTAACACAGTTAGAATATGATATTCTAGAATACGTTGTAATTGAACGTTTGGCACATGGTGGGCGTGAGAAGCTGAAGGAAGATGGGCTTAATTTATCAGACTGGCTTCAGTCCCTTGCATCTTTTTGGGGTCACTTGTGTAAGAAGTACCCCTCTATGGAGTTGAGAGGCCTTTTCCAGTATCTTGTTAACCAATTAAAGAGGGGTGTTGGTATTGAGCTTGTTTTGCTTCAGGAACTAATCCAGCAAATGGCAAATGTTCAGTACACTGAAAACATGACTGAGGAACAACTTGATGCTATGGCAGGAAGTGAAACTTTACGCTTTCAAGCTACTCTTTTTGGTATGGCTAGGAACAATAAGACACTAGGCAAATCTACTATGAGGCTGAGAGACTCTTTACTTCCAAAGGAAGAACCTAAGTTGGCTATACCTCTTTTATTGCTTATAGCACAACACCGCTCCATGGTTGTGATACATGCGGATGCACCGTATATTAAAATGGTTAGTGAGCAATTTGACCGCTGCCATGGAACACTTCTTCAGTACGTGGAATTTCTTTTAAGCGCTGTTACTCCAACTTCAAGTTATGCTCAGCTAATTCCCTCTCTCAATGACCTTGTTCACCATTATCACCTTGATCCTGAGGTGGCTTTTCTAATCTATCGCCCAGTTCTCAGGCTCTTCAATAGTACCACTAGTACTGACGTCTTCTGGCCCCTTGATATGACAGAAGAAACTCTTGCAGCAAGTGATGAAAATGATGTTGAAGGAAAATCTCTAAGTGACATTGTTCTAGTTGTGGGCGCACCTGGAAATTCTATTAAACCTATTCTGATTAGATGGCCAGATCTTCTGGTAACCATTCGATCAATGCTACCTGCAAAAGCATGGAATAGCCTCTCTCCTGACCTCTATGTGACATTTTGGGGGCTTACCCTTTATGACCTTTATGTTCCAAGAAATCGATATGAAGCAGAAATTGCGAAGCAGCATTCTGCTATTAGAGCATTAGAAGAGACCTCTGATAATTCAAACATGGCTATTTCAAAACGGAAGAAGGATAAGGAACGCATCCAAGAATTACTTGATAGACTTTCCAATGAGCTTCAGAAGCATGAACAACATGTTGCATCTGTGCTGCGTAGGCTTAGACGTGAAAAAGATAAGTGGCTGAGTTCTTGCCTTGACACGCTAAAAATAAATATGGAATTTCTTCAGCGGTGTATTTTTCCTCGCTGCATTTTCAGCATGCCAGATGCTGTGTATTGTGCAAAATTTGTGCACATGTTACATTCTCTTGGAACACCATTCTTCAACACAGTCAATCATATCGATGTTTTAATTTGCAAGACATTACAGCCAATGATATTCTGTTGCACTGAGTATGAAGCTGGAAGACTTGGAAGATTCTTATACGAGACACTTAAAATGGCATATTATTGGAAGAGTGATGAATCTATTTATGAACGCGAATGCGGAAACATGCCAGGATTTGCTGTTTACTACAGATATCCCAATAGTCAACGCGTGGCCTATGGCCAATTTGTTCGGGTGCATTGGAAATGGAGTGGAAGGATGACGAGGTTGCTGGCACAGTGTTTGGAGTCCACAGAGTATATGGAAATTCGTAATGCTCTTATCATATTAACAAAAATTTCTAGCGTATTTCCTGTGACTAGAAAAAGTGGTGTCAACCTTGAAAAACGGGTGATTAAAATTAAAGGCGATGATAGGGAGGATCTCAAAGTTTTGGCGACTGGTGTAGCTGCAGCTTTGGCTGCTCGTAAGAGTTCATGGATTTCTGAAGAAGAATTTGGAATGGGTTATCTTGATCTTAAGTATGCGGCATCACCTGCTAAGCCTTTGAGCATCAGCCTGGGCAGCGTGCCTAATGGTTCTGCTCTCGGTGTATTTCAAAATGAGATGAATGGCTCACGGATTTCCTCTGCGGTTAATTTGTCTGTTGATCATTCTATTAAAGAACAGCAGATGGTTGTCTCTGGAAGGTCAGTAGATGGAAGATTAGAACGTCCTGAAAGTTCAGCTCCTATGAAGTCTGATGTGGTACAATCAAAACAAAGAGTTACCACATCAGCTGGTGGGTTGCCCAGTCAGCCTGCTTTATCTTCATCCCATCAATCAAGTATGAGTGCTAAGGCACCTTCTAATTTGAAGAATACAGAAGAGCTTAATAGGGCATCATCAATTGAATCCGAGTCAAAATCTCAGCTCAAACGTTCAGTACAGAGCTTGCCCGGGAAACAAACAAAACCAGACATGGTAAAGGATGATATTAAATCAGGAAAATCAATCAGTAGGGCTGTAATTCAGGCTTCTTCTACTTCTGACAGAGATTCAACTCATCCTCTCGAGAGTAGGCAGAGTGGAACCACTAATAATGTTGCGGCTATATCAAACAACGGTAACCTGATTCAAATATCAGGGAAAACACAGGCTTCTGTAGCAAAAAACGATATGCATAGTGGCATCTCAAGAATGGAAACTGCAGCAGCCAAACCCTCAGACAATAATTCTGAAATATCTGAAACTTCAAGAAGTGCCTCTGCTATGAGAACACTACATTCTTCTCTCCTCCCTGATGACCCTAAACTGCAGCAGAAAAGGGCAATCACAGCTGAAGAACAGGAAAGGTTAAGCAAGCGCAGGAAGGGCCTTGATCCTGAAGGAAAAGATGACCATGTCGCCGAAGTTCGGTTGCTCGACAAATCTCATCTGATAGATCACGAAAAAGCTGGATCCGATGAACAGCATCAAAATCGAGCCACCTCAGAAAAACAGAAAGAGAAGGGCCCTGAGAGGTTTGACAAAGACCACAAGGAAAGATTGGATCGATACGATGTGGCTCGCAGCGAAGAAATTCATGATAAATCGCGAGACAAGTCAATGGAAAGACACAGCGGAGAGCGTTCCAGCGAGCGAGTGCTGGAGAGAGCATCCGATAAACTGTTAGATAAAATTAAGGATGAGAGAGGCAAACCTCGGCACAGCGAACTTTCCACTGATAAATCCGAGGAGAGATTTAATGGGCAAAGTTTGCCGCCTCCGCCACCGCTGCCTCACAGTTTTGTTCCTCAATCTGTCGGTGGCAGCCGGAGAGACGAAGAAGCAGATAGAAAGAGCAGTGCCGGCAGACACATCCAGAGGCTGTCTCCTAGACATGATGATAAAGATAGAAGGCACTCCGAGGAGAATGTTCCTCAGGATGACGCAAAACGGAGACGAGACGATGATTTTCGAGATAGAAAACGCGAAGAGCGAGATGGTATTCCGCTCAAGGCGGACGAAAGAGATAGGGAAAAATCGAATCTCTTAAAGGAAGATTTGGACCCAACCGCTGCCAAACGAAGGAAACTCAAAAGGGATCATTTATCCGAGCCCGGCGGGGATTATTCAGCCGTCGTGGCGTCCTCTTCGATGGCATTGGGAGCTCCTCAATCATTTGATGCAAGGGAGAGGAATGATCGGAAAGGAGGCGCTATGACAATGCCGCATCGGGCCACTTATGCCGACGAACAGGGGCCGCCCAGGCTGCACGGGAAGGAAGCTGCGGGCAAGGCTGCCCGTCGAGAGTCCGATCAACTCCATGAGAGGGAGTGGGAAGAAGAGAAGCGGCAAAGAACTGACGCAAAGAGAAAGCATCGCAAGCAGTAGGCAGTATATATGATTATAATTCATAATGAAAAGCCTTAATTCTTGCAGCAGATTCGAAGCTTCTTTTTAAACTAGCCGGAAAAAAAAAAGATGCAGTGTCGTTTCAGGATTGAATGGGATGAAAGCCTGTTTCTTAAATGAGATTTTGTGTAAAGGCGATTCGAGTTCAGTTCCAATGCCTCCTTTAAATCAGAATGGCTATTTTCTTCATTTGTTTGTTGTGATACATAATACTATTGTATAACTGAGGATATTGTTCTAGGCTTAATTTCTAGTGTTTTTTAAGTAAAAATTAACTACAAATCAGGGGTTTTGGAAAAATTTAATTATTTTTATTTATATGTAATGATTTTTTGGGAATTCGCATTCTTTTGTTTATCGT

Network for GWHGAAEX005114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16134.4	THOC2_N	35	415	9.70E-47
PF16134.4	THOC2_N	437	590	3.00E-22
PF11732.7	Thoc2	592	667	4.10E-30
PF11262.7	Tho2	925	1219	6.80E-100

Protein Sequence

>GWHPAAEX005114
MSFQCPEFKFVTDGCLHEWKASNSNFKLPEPVSMTRFLYELCWAMIRGDLPFQKCKLALDSAAFSEEKKEEIGSTLADIIAHMGQDLTMSIEHRNRLSKLAKWFAESSLVPLRLFQERCEEEFLWESELSKVKAHDLKSKEVRINTRLLYQQTKFNLLREESEGYSKLVTLLCKNPSDAVSQNTSSGIISIIKSLIGHFDLDPNRVFDIVLECFELNPENDIFYNLIPIFPKSHASQILGFKFQYYQRMEVSSPVPPGLYRLTALLVKANFIDLDSICAHLLPKDEEAFEHYDTLIAKRFEEANNIGKINLAAIGKDLMDDEKQDITVDLFTALDMESDSALEHAAEVENNQSFGLLIGFLSIDDWYHAQVLFDRLSHLNPVAHILVCEGLFRAIEKSISSSYDIVCQMHLQNIGNSNTVNLDITESIKISTSTPVDLSRDLFQMLAAAGPYLHRDTILLQKVCRVLRGYYLSAQESAIVAGNMFSNVSGDDCRRHPCFRAKEARLRVEEALGACLLPSLQLVPANPAVGKEIWEVLSLLPYEARYRLYGEWEKVDENIPMVLAARQIAKLDTRRILKRLAKENLKQLGRMVAKLAHSNPMTVLRTIVHQIEAYKDMIAPVVDAFKYLTQLEYDILEYVVIERLAHGGREKLKEDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGVGIELVLLQELIQQMANVQYTENMTEEQLDAMAGSETLRFQATLFGMARNNKTLGKSTMRLRDSLLPKEEPKLAIPLLLLIAQHRSMVVIHADAPYIKMVSEQFDRCHGTLLQYVEFLLSAVTPTSSYAQLIPSLNDLVHHYHLDPEVAFLIYRPVLRLFNSTTSTDVFWPLDMTEETLAASDENDVEGKSLSDIVLVVGAPGNSIKPILIRWPDLLVTIRSMLPAKAWNSLSPDLYVTFWGLTLYDLYVPRNRYEAEIAKQHSAIRALEETSDNSNMAISKRKKDKERIQELLDRLSNELQKHEQHVASVLRRLRREKDKWLSSCLDTLKINMEFLQRCIFPRCIFSMPDAVYCAKFVHMLHSLGTPFFNTVNHIDVLICKTLQPMIFCCTEYEAGRLGRFLYETLKMAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVAYGQFVRVHWKWSGRMTRLLAQCLESTEYMEIRNALIILTKISSVFPVTRKSGVNLEKRVIKIKGDDREDLKVLATGVAAALAARKSSWISEEEFGMGYLDLKYAASPAKPLSISLGSVPNGSALGVFQNEMNGSRISSAVNLSVDHSIKEQQMVVSGRSVDGRLERPESSAPMKSDVVQSKQRVTTSAGGLPSQPALSSSHQSSMSAKAPSNLKNTEELNRASSIESESKSQLKRSVQSLPGKQTKPDMVKDDIKSGKSISRAVIQASSTSDRDSTHPLESRQSGTTNNVAAISNNGNLIQISGKTQASVAKNDMHSGISRMETAAAKPSDNNSEISETSRSASAMRTLHSSLLPDDPKLQQKRAITAEEQERLSKRRKGLDPEGKDDHVAEVRLLDKSHLIDHEKAGSDEQHQNRATSEKQKEKGPERFDKDHKERLDRYDVARSEEIHDKSRDKSMERHSGERSSERVLERASDKLLDKIKDERGKPRHSELSTDKSEERFNGQSLPPPPPLPHSFVPQSVGGSRRDEEADRKSSAGRHIQRLSPRHDDKDRRHSEENVPQDDAKRRRDDDFRDRKREERDGIPLKADERDREKSNLLKEDLDPTAAKRRKLKRDHLSEPGGDYSAVVASSSMALGAPQSFDARERNDRKGGAMTMPHRATYADEQGPPRLHGKEAAGKAARRESDQLHEREWEEEKRQRTDAKRKHRKQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12879	THOC2	Spliceosome	map03040
K12879	THOC2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.170
SRP064423	SRR2545915	Juvenile tuber	43.430
SRP108465	SRR5643513	five period of Gastrodia elata	17.790
	SRR5643514	five period of Gastrodia elata	17.380
	SRR5643515	five period of Gastrodia elata	16.580
	SRR5643524	five period of Gastrodia elata	16.530
	SRR5643525	five period of Gastrodia elata	16.060
	SRR5643528	five period of Gastrodia elata	12.040
	SRR5643658	five period of Gastrodia elata	18.160
	SRR5643659	five period of Gastrodia elata	26.700
	SRR5643660	five period of Gastrodia elata	31.380
	SRR5643661	five period of Gastrodia elata	25.890
	SRR5643662	five period of Gastrodia elata	24.370
	SRR5643663	five period of Gastrodia elata	27.170
	SRR5643664	five period of Gastrodia elata	32.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.880
SRP279888	Gastro	Gastrodia elata tuber	39.19
	Juven	Juvenile tuber	40.88
	Mother_Gastro	Mother tuber of Gastrodia elata	20.34
	Mother_Juven	Mother tuber of Juvenile	33.40