Detail information of GWHGAAEX005117/evm.TU.scaffold_16.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672171915|ref|XP_008806036.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Phoenix dactylifera] |
| Swissprot | tr|Q9FK93|PP406_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g39680 |
| trEMBL | tr|M5WY68|M5WY68_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ18161.1} |
| TAIR | AT5G39680 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 1846295 | 1848346 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005117
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 45 | 72 | 0.06 |
| PF01535.19 | PPR | 73 | 98 | 0.00017 |
| PF01535.19 | PPR | 148 | 174 | 0.023 |
| PF01535.19 | PPR | 176 | 202 | 0.013 |
| PF13041.5 | PPR_2 | 274 | 322 | 3.70E-08 |
| PF01535.19 | PPR | 350 | 373 | 0.0019 |
| PF13041.5 | PPR_2 | 375 | 422 | 3.60E-07 |
| PF01535.19 | PPR | 516 | 544 | 1.3 |
| PF14432.5 | DYW_deaminase | 549 | 672 | 7.50E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.900 |
| SRR2545915 | Juvenile tuber | 3.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.610 |
| SRR5643514 | five period of Gastrodia elata | 6.480 | |
| SRR5643515 | five period of Gastrodia elata | 10.130 | |
| SRR5643524 | five period of Gastrodia elata | 6.610 | |
| SRR5643525 | five period of Gastrodia elata | 3.450 | |
| SRR5643528 | five period of Gastrodia elata | 9.650 | |
| SRR5643658 | five period of Gastrodia elata | 3.980 | |
| SRR5643659 | five period of Gastrodia elata | 2.820 | |
| SRR5643660 | five period of Gastrodia elata | 1.330 | |
| SRR5643661 | five period of Gastrodia elata | 2.400 | |
| SRR5643662 | five period of Gastrodia elata | 1.900 | |
| SRR5643663 | five period of Gastrodia elata | 1.380 | |
| SRR5643664 | five period of Gastrodia elata | 1.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 80.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 58.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 77.19 |
| Juven | Juvenile tuber | 2.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.58 | |
| Mother_Juven | Mother tuber of Juvenile | 16.42 |