Detail information of GWHGAAEX005119/evm.TU.scaffold_16.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297625173|ref|YP_003706607.1|4.00E-46MATE efflux family protein [Truepera radiovictrix DSM 17093]
KOGKOG13474.00E-137Uncharacterized membrane protein, predicted efflux pump
nrgi|695077623|ref|XP_009386162.1|0PREDICTED: MATE efflux family protein 3, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SVE7|MATE3_ARATH0MATE efflux family protein 3, chloroplastic (Precursor)
trEMBLtr|W1NK69|W1NK69_AMBTC0MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT2G383304.00E-137MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002418670091931223-
Transcript Sequence

Network for GWHGAAEX005119

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE1363031.90E-12
PF01554.17MatE3725144.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.590
SRR2545915Juvenile tuber21.170
SRP108465SRR5643513five period of Gastrodia elata11.740
SRR5643514five period of Gastrodia elata9.800
SRR5643515five period of Gastrodia elata10.190
SRR5643524five period of Gastrodia elata10.560
SRR5643525five period of Gastrodia elata8.580
SRR5643528five period of Gastrodia elata5.790
SRR5643658five period of Gastrodia elata5.780
SRR5643659five period of Gastrodia elata13.860
SRR5643660five period of Gastrodia elata15.120
SRR5643661five period of Gastrodia elata13.010
SRR5643662five period of Gastrodia elata14.980
SRR5643663five period of Gastrodia elata15.240
SRR5643664five period of Gastrodia elata14.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.610
SRR6049655Rhizomagastrodiae_C368-T10_good_19.420
SRR6049656Rhizomagastrodiae_C368-T07_good_115.940
SRR6049657Rhizomagastrodiae_C368-T07_good_128.090
SRR6049658Rhizomagastrodiae_C368-T04_good_129.180
SRR6049659Rhizomagastrodiae_C368-T04_good_136.940
SRR6049660Rhizomagastrodiae_C368-T01_good_126.990
SRR6049661Rhizomagastrodiae_C368-T04_good_124.810
SRR6049662Rhizomagastrodiae_C368-T01_good_116.160
SRR6049663Rhizomagastrodiae_C368-T01_good_118.300
SRR6049664Rhizomagastrodiae_C368-T10_good_114.410
SRR6049665Rhizomagastrodiae_C368-T10_good_114.410
SRP279888GastroGastrodia elata tuber 19.99
JuvenJuvenile tuber21.08
Mother_GastroMother tuber of Gastrodia elata 8.73
Mother_JuvenMother tuber of Juvenile 17.60