Detail information of GWHGAAEX005127/evm.TU.scaffold_16.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 1.00E-37 | Heat shock transcription factor |
| nr | gi|590677912|ref|XP_007040151.1| | 3.21E-39 | Winged-helix DNA-binding transcription factor family protein, putative isoform 1 [Theobroma cacao] |
| Swissprot | tr|Q6Z9C8|HFB2B_ORYSJ | 2.00E-38 | Heat stress transcription factor B-2b |
| trEMBL | tr|A0A061G680|A0A061G680_THECC | 1.00E-39 | Winged-helix DNA-binding transcription factor family protein, putative isoform 1 {ECO:0000313|EMBL:EOY24652.1} |
| TAIR | AT4G11660 | 1.00E-37 | winged-helix DNA-binding transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 2238725 | 2239015 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005127
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 27 | 85 | 2.70E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.940 |
| SRR2545915 | Juvenile tuber | 140.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.810 |
| SRR5643514 | five period of Gastrodia elata | 15.300 | |
| SRR5643515 | five period of Gastrodia elata | 41.040 | |
| SRR5643524 | five period of Gastrodia elata | 23.840 | |
| SRR5643525 | five period of Gastrodia elata | 112.780 | |
| SRR5643528 | five period of Gastrodia elata | 107.980 | |
| SRR5643658 | five period of Gastrodia elata | 62.700 | |
| SRR5643659 | five period of Gastrodia elata | 50.290 | |
| SRR5643660 | five period of Gastrodia elata | 77.450 | |
| SRR5643661 | five period of Gastrodia elata | 77.260 | |
| SRR5643662 | five period of Gastrodia elata | 63.720 | |
| SRR5643663 | five period of Gastrodia elata | 52.680 | |
| SRR5643664 | five period of Gastrodia elata | 111.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 84.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 155.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 98.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 90.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 108.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 90.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 69.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 69.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 154.28 |
| Juven | Juvenile tuber | 46.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 432.25 | |
| Mother_Juven | Mother tuber of Juvenile | 196.18 |