Gene detail

Detail information of GWHGAAEX005134/evm.TU.scaffold_16.76

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	3.00E-143	FOG: Predicted E3 ubiquitin ligase
nr	gi\|720073080\|ref\|XP_010278589.1\|	0	PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q93Z92\|RING4_ARATH	4.00E-150	E3 ubiquitin-protein ligase At4g11680
trEMBL	tr\|M0RP10\|M0RP10_MUSAM	3.00E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P03300_001}
TAIR	AT4G11680	3.00E-143	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	2411453	2448698	+

Transcript Sequence
>GWHTAAEX005134 CTCTCATCGTATTCCCTCTCTTCACCGACAATTTAGTTCCCCGATCAGAATCCGAGTCTGGACATTTCTGATGCCTCGAGAAAAAACGACTCCCAGACTCTGCGCAGTTCCCATTGTTATCTCGCATCGGAGATCGAAGCCATTGTCTCATCGATTACGTTAACGAACCCCGGAGTCATTTTACCAACCAATCATTGAGACGACATCCAGCTGCTCTTCCCGACACTTCTATATCTTTAGCCCCAACTGCAGATTTCTGCTCATTTTGTCACAATTCATCTTGGCGATGTTGGCGACGAGGGCGATCAACCCGATGGTAGTAGCTGCGGTCGACCAGGCGCCGCTGCTCGGCACGCATGGCGGAAATGGAGATGAGCGCGCGCGTCGTCCTTCCCGGCGGCCGAGCCTGAGCGGAGCGGCGAGGTTTCTGAGGAGGGCAAGCAGCCGGCGGTTGATGAGGGAGCAGTCGATGCTTGTGAGGGAAGCGGCTGCGGAGCAGCTCGAGGAGCGGCAGAGCGACTGGGCTTACTCCAGGCCGGTGGTGTTTCTTGACATTCTGTGGAATCTGGCTTTTGTGGGGGTTGCCGCAGGGGTTCTGATGATGAGCAGGTACGAGAGCCCCACGATGCCGTTGAGGCTATGGATTGCGGGGTATGCGCTGCAGTGCGTGTTGCATATGATCTGCGTGTGCGTGGAGTACCGGAGGAGGCATCCGCAACATCAAGCTGTTTTCGAGTATGGTGGAAATGGAAGCCAAGGTGGTAGAAGTCAGGGTAGTTCTGGCCCGAGCTCCCCAGAGGATTCAGAGGAAGGCAGAGGAGGTGCTGCAAATTATGATTCCGAGCATGACGAGGATGGGAATAACAGTATTGCAAAACATCTTGAGTCTGCAAACACAATGTTTTCGTTCATATGGTGGATAATTGGTTTCTATTGGGTATCTGCTGGAGGTCAAGCTTTAACTCGTGATTCTCCTCAACTCTACTGGTTATGTATTGTGTTTCTGGCATTTGATGTGTTTTTTGTTGTTTTCTGTGTTGCTCTTGCATGCATCGTCGGCATTGCTGTTTGCTGCTGCCTGCCTTGCATCATTGCAATCTTATATGCAGTTGCAGACCAGGAAGGTGCATCTGAAGATGACATCCGCCGCCTGCCTAAATTTAAATTTAGAAGAGCAGGAGATTCTGAAAAAATAGAAGAGATATCGAGGACTTGTGGAGGAATAATGACTGAATGCGGTGATCCTCAAAATGAGGTCCGCCTTTCATCTGAGGATGCGGAGTGCTGCATCTGCCTAACGGCATATGATGATGGCGTGGAATTGCGTCAGCTTCCCTGTAGCCACCATTTTCACTGTTCCTGCATTGACAAGTGGCTTCAGATCAATGCAACCTGCCCACTCTGCAAGTATAATATTATAAAGAGCTTCACCAACTCTGAGGTATAGTGGTTACTAACTAGTTTGACAAAACAAAGAATGCGCTTCTTTTATGTATCCTTTGTGTGCTCCTCTTTTTTAATTTTTATTTATTATTTCTCTTGTGTTTCTGTTCTTTATATCTTGTTGTGCCTCTACATTAAAGTTTAAAACCTGCATGTGGCCTTGGACTGCCACAGCCAAATCTCTGATGTGTAAGTTTATTTTCCCTTCTTTGTTTGTTTTTCTTTTTTAATTTGGCTTTTGTAAAGAATGAAAATTCACAATTATAGTGATGAATAATGCTTCTTCATCTCTTGACAAGGCTATTGAGGCCTTTTGCAAGCTGTTGATGAAGCCCTGAGTTATTCGTTTACTTTTTGGTTTTAAAGGACTTCTATTTCAATGGCACATGTATATATTATTACCTATTAACACAACCTATTTTGTAGGTTTGAAACACTCATCAAAAACATTGAAATTTTTTAATTACTAAATGCTTTCCATTTTCCTTTTCCTTTATGCCCGATTGAAGTCTTTGTTCTGTTTGAACACGTCCGCCAAGGCCCTCAAGGTTGAATTTTTGTCGAACAAATATTCATCTTCATTAGAATACACCACTTTGTCATTAAAGCCAGTCTTGCAATTTTTTTCGAATTTATACGCATGCATATATGTGCGTGTATAACAAATCTATTATCCTTAAGGAAAACAAAAAACACTTTATTCCGCAATCTTTATCGCCTCACTTCCATCAACTGCTCAAGATTAAAACACTAGAGGCAACATGCCATATTACTTGATATCCTTAAGCGCATCTTAAATCTTGATCTTTGATATAGTGTAATGAATGGTGGATGATGTCGAGCTAAAAGTGCATTTTTTTTT

Network for GWHGAAEX005134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	332	374	9.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.340
SRP064423	SRR2545915	Juvenile tuber	29.750
SRP108465	SRR5643513	five period of Gastrodia elata	20.470
	SRR5643514	five period of Gastrodia elata	21.590
	SRR5643515	five period of Gastrodia elata	22.890
	SRR5643524	five period of Gastrodia elata	25.850
	SRR5643525	five period of Gastrodia elata	15.740
	SRR5643528	five period of Gastrodia elata	16.680
	SRR5643658	five period of Gastrodia elata	19.800
	SRR5643659	five period of Gastrodia elata	32.910
	SRR5643660	five period of Gastrodia elata	31.350
	SRR5643661	five period of Gastrodia elata	32.960
	SRR5643662	five period of Gastrodia elata	22.690
	SRR5643663	five period of Gastrodia elata	31.180
	SRR5643664	five period of Gastrodia elata	22.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.820
SRP279888	Gastro	Gastrodia elata tuber	18.17
	Juven	Juvenile tuber	24.08
	Mother_Gastro	Mother tuber of Gastrodia elata	11.51
	Mother_Juven	Mother tuber of Juvenile	15.05