Gene detail

Detail information of GWHGAAEX005135/evm.TU.scaffold_16.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15613984\|ref\|NP_242287.1\|	3.00E-24	hypothetical protein BH1421 [Bacillus halodurans C-125]
KOG	KOG2289	1.00E-118	Rhomboid family proteins
nr	gi\|727694649\|gb\|AIY60681.1\|	2.05E-164	rhomboid protein Phaam2345, partial [Phalaenopsis amabilis]
trEMBL	tr\|A0A022QTK9\|A0A022QTK9_ERYGU	1.00E-133	Uncharacterized protein {ECO:0000313\|EMBL:EYU29830.1}
TAIR	AT1G63120	1.00E-118	RHOMBOID-like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	2448817	2451738	-

Transcript Sequence
>GWHTAAEX005135 ATCGGAAAGCCGTGCGAATAAAATAGCAACCATCTGCCCGTACAAGCGTCCGCACGAGTCGTTCACCCGACATAAACTCCGCACGTGCGAGCAACTGCCACCAGTCAGTTCTAGAACTTGCCGGCAAATCACGGCAGCCGCCAGCCTCACCCGTTCACCAGCCCTAAATCGCAACACAACCGTTAACGCCGTTAATCCGTTTTTAAAACCGCCTAAAAGGCGCGCCTTCTCTAATAATTACGACCCATGCCACCAAACTCCCTCCGCTTCAAAGCCAAGCAAAGGGCTACTCATCCTCCCCTCTCCCCATAAGGCCACGATAACCCTCTTGACTCAATCCAAGCAAACCCGCCAAAAATAGAAAAATAAAAAAAAACCTCGAAAGAAGAATGGCAGGCGAAGGCGACGGGAAGCGGGGGGAGGAGATGACGCTCCCGCCTTACTTTTACGATGTGCCGGAGACTGACGAGAGGAAAAGGACGGCCTGGATTGTGCCTCTGCTCGTGATCGCCAATGCGGCGGTATTGGCGGCGGCGATGCTTCTGAATAATTGCCCTGCCCATAATGGGGGGAGAAGAGGCTGTCTTGCTTCAGGCTTTCTAGGCCGATTTTCCTTTCAGCCCATCAGGGAGAACCCTCTTCTTGGACCATCATCACACACGCTGGAGAGGTTTGGAGCCCTTCAATGGGATAAAATAGTGCACGAGCATCAATGGTGGAGGCTGTTTTCTTCCATTTGGCTGCATGCTGGCATCATTCATTTGCTAGTAGACAGCCTAAGTTTAATATTCATCGGAATCCGCTTTGAAAAACAGTTTGGGATTGTGAGGGTTGGGGCAATATATCTTGTTTCAGGGGTCGGTGGCAGTGTGCTTTCATCTCTGTATATAACAAAAGGGATCACTGCGGGATCATCTGGCGCCCTATTTGGACTGCTTGGAGCAATGCTTTCAGAACTCATCACAAATTGGGCTATTTATTCTAACAGGGTTGTTGCAATCTCAACTATACTGTTAGTTATAGTTCTAAACCTGATAATTGGGATATTACCTTTAGTGAACAACTTTGCTCACATTGGTGGATTCATATCTGGCTTTCTGCTGGGATTTGTTCTTCTGATTAGGCCTCAGTTTGGTTGGATTAATGAAAGGCACAGTTCTCCTCCACCACCCGCATCCAAGTACAAGTTTTATCAGCTTGTGCTTTTGGTCACATCAATCATATCTCTTCTTGTTGGGTTTACAGTTAGCTTTGTGATGCTTCTCAGAGGAGTGAATGGAAGTGAAGGCTGTGAGTGGTGTAAATACATGAACTGTGTTCCTACATCAAAATGGTCCTGTGAGAATTGATGGAGATATGGTATTAATGGATCTTTTACTTAGGGACAATGTTAATTTAATTATTATTATTATTATTGGTTTTTGGTGATGGACAATTCAATTTGGTTGTTAAATTGATGTGAAGAAAAATGAAATGCAAGTATGAATGTATGATATAATTATTTTTCTTGCTGTTATGTAGTGCCTGGTTAAAAATGTATTATAATTTCATAAAAATGCAAAGTGAATGTTTTGCATCAAAAGTATTATTATTTCACAATTAAAACACTCAATTACAGTTCTAAAATTTATTTCTGATGTCTTAAGAATGCATCAAATCATGATAATAGCAAGCAAATGAATCGATGAGTGGTACTCTATGTGAGAAAGAAAAAGGGAGAAAAAAGAAAAGGCATGGTGTGTGGAGAAGCCTTAAGTTGGGAATGGATCATGAACTCAATATTAGTTTTTTCTAGTTTAATTTTGTTTAATTAGCATTTTATTTATTAGATATGTAATCTTATATTTTAAATAAGGCATAGCCAAGTATGAACTGCAATTTTGCTCACTCAAATGAGCTAAAAGATAGAAAGGATGTAAAAAGGGTTTAAGAAAGTCTAAATGGGCCCACACAAATATGTACTGTAATACCCAGGGTTTGGCACATGATGTGATTACAT

Network for GWHGAAEX005135

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01694.21	Rhomboid	104	245	1.80E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004252	Molecular Function	serine-type endopeptidase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.810
SRP064423	SRR2545915	Juvenile tuber	1.720
SRP108465	SRR5643513	five period of Gastrodia elata	0.670
	SRR5643514	five period of Gastrodia elata	0.880
	SRR5643515	five period of Gastrodia elata	1.140
	SRR5643524	five period of Gastrodia elata	0.980
	SRR5643525	five period of Gastrodia elata	2.340
	SRR5643528	five period of Gastrodia elata	1.870
	SRR5643658	five period of Gastrodia elata	6.310
	SRR5643659	five period of Gastrodia elata	0.770
	SRR5643660	five period of Gastrodia elata	1.120
	SRR5643661	five period of Gastrodia elata	0.790
	SRR5643662	five period of Gastrodia elata	0.530
	SRR5643663	five period of Gastrodia elata	0.670
	SRR5643664	five period of Gastrodia elata	0.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.840
SRP279888	Gastro	Gastrodia elata tuber	2.24
	Juven	Juvenile tuber	1.51
	Mother_Gastro	Mother tuber of Gastrodia elata	3.45
	Mother_Juven	Mother tuber of Juvenile	2.57