Gene detail

Detail information of GWHGAAEX005136/evm.TU.scaffold_16.78

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743777622\|ref\|XP_010919246.1\|	PREDICTED: probable methyltransferase PMT13 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q93W95\|PMTD_ARATH	Probable methyltransferase PMT13
trEMBL	tr\|M0T037\|M0T037_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P20080_001}
TAIR	AT4G00740	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	2455864	2503550	-

Transcript Sequence
>GWHTAAEX005136 GTTCTTATAAATTAATTTTGAAATATTATACATCAAAACCTTACTTATAACTACGAATAAATTATCGCGTGGTAAGCAGTGATTGGAAGGACGCATGTGGGATAGAAATGATTTATTTATTTATTTATAATACGGTATAAATGTGCGGTTTACCGCTCTTATTGAAATTAGCTGAAATAAATTTACTTCATGCCAGTCCAAACACACCACCAGCCCGGGCAAAATTATACCCACGTTCCATCAGTTCCAATGCAAAGCTGCCGCTGCTTGGTGCCAGGCCCCCGCCACCGCGCCTCCTTGTCTCGAATCATCTCTATATAACCCTAGAAGAAGCGCAAGAAGACAGACATCGATCTTGTTCAGATGCGCTGGATCTGATTGGGCGTCATGCGATACGTGAACCATTTGCCACCTAGAAGGGGCGGCAGCTGCAGCGGCGGAATAGCCGGTTGCGCTTCCTTCATTCACCGATGCTCGCTTATCGACTTCGTTGCTGCCTTATTTTTTTCTGCTATACTCCTCTTCCTTCTCCTTGCATTCACTCCACTCGGCGACCCACTCGCAGCTTCCGGCCGACGATACCTTTTGCGACAGTCTGCGTCCTTTGCTCGTCAACGGGAGACAGTGATCGCAGCCATTGATTCTGGATCGGAGGTGGCGATTAAGCAATGTGCAGATGAGGAAGTGGACCTGATGCCGTGCGAAGATCCCAGGCGAAATAGCCAGTTTGCTCGGCATATGAATTTCTACCGCGAGCGCCACTGCCCGATGCCGGGGGAATCAATGCTCTGCATTATTCCTCCACCTCAAGGTTATCGTGTTCGGATTCCATGGCCTGATAGTCTACGCAAGATATGGCATGACAACATGCCGTACAATAAAATTGCTGATAAAAAAGGTCATCAAGGTTGGATGAAAGAAGAAGGCCCATACTTCGTTTTCCCTGGCGGAGGCACAATGTTTCCTGATGGAGCCAAGCAGTACATTGAGAAACTTGGACAATTTATTCCATTTAAGAGTGGTGTATTAAGAACAGCTTTAGATATGGGATGTGGGGTGGCCAGTTTTGGAGGCTTTTTACTCAAAGAAAACCTCTTGACTTTGTCATTTGCTCCGAGGGATTCTCACAAATCTCAGATACAGTTTGCTCTTGAAAGAGGAATACCTGCCTTCGTTGCTATGCTGGGTACTCGACGTCTTCCATTTCCTGCGTATGCTTTTGATCTAGTCCACTGTTCACGTTGCTTAATTCCCTTCACTGCCTACAATGGATCTTACATACTCGAAGTGGATAGATTACTTCGACCTGGGGGGTATCTAGTTATTTCGGGCCCACCTGTAAATTGGTCTAAACAAGAAGTGGAATGGGATCATCTGCAGGCTGCAGCGCTTGCCTTGTGTTATAAACTTATTGTAGTTTATGGTAACACTGCCATCTGGAAAAAGCCCTCCAAAGTTTCATGCGTCAGGGAGAACAAACTTGGAATTGGATACTGCATAGATTCTGATGATACAAATTCTGCATGGTACTTCAAACTAAATGCATGTGTGATTAAGAACCTGGTCAAGGGAGAATTGTCCGTTGGATCAATATCTAAGTGGCCAGATAGGCTACTGAGACCCTCTCCAAGGCTCTTGCTTACTGATAGTGGGGCTGATTCTTTTGAAGTTGATACACGTATTTGGGCTAGACGTGTTGAACACTACGAGAAATCTCTTGGCATAAAGCTGGGATACCCATCAGTACGCAATATTATGGACATGAATGCCAACTTGGGAGGGTTTGCTGCTGCAGTGTCTCGAAACGAAGTCTGGGTTATGAATGTTGTTCCTGCTCACTTTCCATTAACACTTGACGTGATTTATGACAGAGGTCTTATTGGAGTTTATCATGATTGGTGTGAGGCATTCTCAACATACCCCCGGACATATGACTTGCTGCATGTTTCAGCCATCAGCTCACTAATTGCCGGCTCATCATCAAAGTTCAACAGGTGCCACCTCGTTGATTTGATGGTGGAGATGGATCGAATCTTACGCCCGAAAGGGACGGTTGTGATACGAGACTTTGTTGAAGTTATCAACAAGGCAGCGCGAATAGCCCGGGCAATGAGATGGGCTGCTGTAGTGCACCAAGTGGATCCAGAATCAGTAGATGATGAAAAGATTCTTGTAGCAACAAAGTATTATGGGAATTGATTTCTAAATTCCTGTAAGTGATTCTACTGCTTCCTTGATCATTATTTCTTCTTTGTTCATTCTTTCTTTCTTATAGCATCCATGTATCTAAGTTATGCAGTCTTGCTCATATAGAATATTACTATAGATTATTTATTGTTATTATTTCTCTACTATATTGCCTGTATTATGAAGTCGCTTAGTCACGAATAGGGCTGACAATTTAC

Network for GWHGAAEX005136

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	101	599	4.80E-197

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.080
SRP064423	SRR2545915	Juvenile tuber	9.270
SRP108465	SRR5643513	five period of Gastrodia elata	12.060
	SRR5643514	five period of Gastrodia elata	9.760
	SRR5643515	five period of Gastrodia elata	9.810
	SRR5643524	five period of Gastrodia elata	9.280
	SRR5643525	five period of Gastrodia elata	18.650
	SRR5643528	five period of Gastrodia elata	23.570
	SRR5643658	five period of Gastrodia elata	21.010
	SRR5643659	five period of Gastrodia elata	11.380
	SRR5643660	five period of Gastrodia elata	9.280
	SRR5643661	five period of Gastrodia elata	11.590
	SRR5643662	five period of Gastrodia elata	7.260
	SRR5643663	five period of Gastrodia elata	9.450
	SRR5643664	five period of Gastrodia elata	6.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.580
SRP279888	Gastro	Gastrodia elata tuber	6.98
	Juven	Juvenile tuber	10.97
	Mother_Gastro	Mother tuber of Gastrodia elata	5.67
	Mother_Juven	Mother tuber of Juvenile	5.24