Gene detail

Detail information of GWHGAAEX005137/evm.TU.scaffold_16.79

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1363	2.00E-112	Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains)
nr	gi\|743830599\|ref\|XP_010934462.1\|	0	PREDICTED: uncharacterized protein LOC105054604 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0RQ36\|M0RQ36_MUSAM	1.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P07060_001}
TAIR	AT4G23040	2.00E-112	Ubiquitin-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	2518434	2553720	+

Transcript Sequence
>GWHTAAEX005137 ATCACCCGCAGCGCAAAATTTACAGTTCCCTTGCTTTCCTCTTGCTTGCTTGTGGTCTGGGTTTTCTCTTACTTCACGCACAGGAAGAACTTTTTTCTCAACCCACAATAAGAGAATCTGAAAGCAAAACCCTAGTACGGTCGCGAGCACCGAAATGGCAAGGCCGACACAGGATGCCATCGATATGTTTGTGAACATTACAGGCGTATCCGAAGCTGTGGCTGCGCAGAAGCTTGAGGAACATAATGGCGATCTAAATGAAGCTGTTAATGCACATTTCAGTCAAGGAGATAGGATGAGTTCTAGCACGACATTTACTCCTACGACTCGTGATGATTTCATGGATATAGATGATCCTATTAATGTTGAGACCGCTGCGCCTGCTATTCCACCATTTTCAGCTATTCGAAGGCTGAACCCATTTTCAATTCTTGAATCACATTTTGGTCAGGGTCTTTTTGATGATGGTAGGGCTGACTTTATATCCCACGCTCCGCGGGTTTCACACCCTAGGGATGTAAGGGAGATTCCAATTGAGTTCAAGGATGAGAGTCCTCATCTTGATTCTTCTGGCTGTGCACCAAAAATTGAGGATGTTACTGGAAGTGTTTCTTCACACGAACCTGAAGTTCATGGGACTGTTATTATTGATGATGATGATGATGATGATGATGATGCCCTTCCAAGTGCACCTGCAGCTCATGGTGCTAACAACTCTGTTGGTGTTTCTGCCAGAAGACATCCTACAACAAGTTTTTCTTCTTTAACTGATGTGATTGACTACACCAATGATATCGAAGAAGAAATGATACAAGCTGCAATTGAAGCTTCAAAGAGGGAGGCTGAGGAATATGGAAAACAGCAATATGATGCTTCAGATAGTTTAGCTGGTTCAAAACATGATTCATATGTTTCTGAGGATTCTGATCTTGCTCATGCAGTGTCATTGTCCCTGAAGACTGCTGAAAGAGAAAGCTTTCATCACACGCAAGGTGAGAATACTTTCAATGCACCTGCCATCAGGCCAGAATATTCTGGCAGGACAGAAATTTCTGGAGGGCCGCTCATATCAAATGAAAGGCAAGAGCTTGAGATATCAAAACCTCAAACTTCCAAACAATCAAGCATGAATGACAGAGATTCGTCCTTTCAAGATGACGTTGATGATGATGTGGACAAGGAGGCACTGCGACGTTCTAAACATGCAGTTTCTGGAAATACTTCTCCTTCGAGCTCACAGCAGCAAGGAATCACAGGTCATGCTCATTGTAATGGAAACTCATTCCAGTCAGATGAGTGGGGTGGCCTCTCAACTGAAGAGCATGATGAAGCCGTCATGCTTGAGGCAGCCATGTTTGGGGGGGTTCCCCAAGGAGTTTCATATGAAAAATTTGCATACCCTCATCATCAGGCTATACCAACCCAGTATGATAGGGCGCCCCATCCGCCCTCTCCAAGACTTGCCGAGCAGCGATTGCTAAGAGAGCAGCAGGATGATGAATATCTTGCATCGCTGCATGCAGACAGAGAGAAAGAACTGAAAGCCATGCAGGTGGCTGAGAAGCGCCGATTGGAAGAGGCAGCTGCCATCGAAGCTGCTCTCAGGAGGGAAAAGAATGAAGAGGAAGCGGCTCATAGGAAGCAGCTTGAAGAAGAGGAATTTGAGAGGAAACTCGCTGCAAAACAGGCATCTCTTCCCGGGGAACCTTCTGCTGACAATGAGAACTCTGTGACGCTCCTTATTCGCTTGCCTGACGGCAGCCGCTGTGGAAGGCGGTTTTTTAAGTCTGACAAGCTGCAGTTACTGTATGATTACCTTGATGTTGGAAGGCTGGTGAAGCCTGGTAGTTATAAATTGGTGCGACCCTATCCTCGCCGTCCATTTGCCGATGAAGAGAGCCAGTTATCTCTGAGCGAGCTGGGACTCACCAGCAAACAGGAAGCATTGTTCCTGGAGTTAATCTAATCCAATGTGTATAATTATTATTAGACTTTAATGTTTATATTCTTTTATCGTTATATATATATATATATATATATGTGCCCATAAAGTTATTTATACTTATGCAATTAAAGTTTATAATTGGATTCAATAACATGTTAATTATTATTGTTATTATGTTTTGAATAATGACATACAAACCCCTTATAGTTATATGATTATTCTTTATTTTCCATTTGAATGATTAGAAGATGGTATGTTGGATGATAATTTGGGGTATTTGTAGAGATTTTGGTGGA

Network for GWHGAAEX005137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14555.5	UBA_4	6	46	3.00E-11
PF00789.19	UBX	522	601	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.590
SRP064423	SRR2545915	Juvenile tuber	45.630
SRP108465	SRR5643513	five period of Gastrodia elata	34.750
	SRR5643514	five period of Gastrodia elata	40.250
	SRR5643515	five period of Gastrodia elata	38.230
	SRR5643524	five period of Gastrodia elata	41.250
	SRR5643525	five period of Gastrodia elata	49.510
	SRR5643528	five period of Gastrodia elata	72.420
	SRR5643658	five period of Gastrodia elata	84.050
	SRR5643659	five period of Gastrodia elata	39.130
	SRR5643660	five period of Gastrodia elata	42.840
	SRR5643661	five period of Gastrodia elata	39.860
	SRR5643662	five period of Gastrodia elata	43.810
	SRR5643663	five period of Gastrodia elata	44.710
	SRR5643664	five period of Gastrodia elata	46.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.050
SRP279888	Gastro	Gastrodia elata tuber	54.59
	Juven	Juvenile tuber	55.89
	Mother_Gastro	Mother tuber of Gastrodia elata	64.66
	Mother_Juven	Mother tuber of Juvenile	76.97