Detail information of GWHGAAEX005140/evm.TU.scaffold_16.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-153 | FOG: PPR repeat |
| nr | gi|743859885|ref|XP_010942864.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Elaeis guineensis] |
| Swissprot | tr|Q9LSL9|PP445_ARATH | 2.00E-153 | Pentatricopeptide repeat-containing protein At5g65560 |
| trEMBL | tr|K3XV21|K3XV21_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si005778m} |
| TAIR | AT5G65560 | 8.00E-153 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 2635086 | 2650680 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005140
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 207 | 230 | 5.00E-08 |
| PF12854.6 | PPR_1 | 242 | 267 | 2.20E-07 |
| PF13041.5 | PPR_2 | 281 | 329 | 1.80E-14 |
| PF13041.5 | PPR_2 | 351 | 399 | 1.90E-17 |
| PF13041.5 | PPR_2 | 421 | 469 | 4.80E-13 |
| PF12854.6 | PPR_1 | 486 | 519 | 1.40E-07 |
| PF13041.5 | PPR_2 | 528 | 574 | 4.40E-15 |
| PF12854.6 | PPR_1 | 592 | 621 | 5.80E-07 |
| PF13041.5 | PPR_2 | 631 | 679 | 5.70E-14 |
| PF01535.19 | PPR | 704 | 733 | 0.035 |
| PF13041.5 | PPR_2 | 736 | 782 | 7.80E-14 |
| PF13041.5 | PPR_2 | 856 | 905 | 1.10E-16 |
| PF01535.19 | PPR | 930 | 956 | 0.00067 |
| PF01535.19 | PPR | 964 | 994 | 0.08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.900 |
| SRR2545915 | Juvenile tuber | 18.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.940 |
| SRR5643514 | five period of Gastrodia elata | 3.600 | |
| SRR5643515 | five period of Gastrodia elata | 3.450 | |
| SRR5643524 | five period of Gastrodia elata | 3.410 | |
| SRR5643525 | five period of Gastrodia elata | 2.880 | |
| SRR5643528 | five period of Gastrodia elata | 1.020 | |
| SRR5643658 | five period of Gastrodia elata | 1.420 | |
| SRR5643659 | five period of Gastrodia elata | 8.540 | |
| SRR5643660 | five period of Gastrodia elata | 9.050 | |
| SRR5643661 | five period of Gastrodia elata | 6.120 | |
| SRR5643662 | five period of Gastrodia elata | 7.720 | |
| SRR5643663 | five period of Gastrodia elata | 8.160 | |
| SRR5643664 | five period of Gastrodia elata | 9.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.15 |
| Juven | Juvenile tuber | 18.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.41 | |
| Mother_Juven | Mother tuber of Juvenile | 8.04 |