Detail information of GWHGAAEX005142/evm.TU.scaffold_16.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|672164186|ref|XP_008801961.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like isoform X1 [Phoenix dactylifera]
Swissprottr|O22714|PPR86_ARATH0Pentatricopeptide repeat-containing protein At1g60770
trEMBLtr|M0S0C5|M0S0C5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P16170_001}
TAIRAT1G607700Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002426649572683538+
Transcript Sequence

Network for GWHGAAEX005142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1181487.00E-06
PF13041.5PPR_21501981.50E-09
PF01535.19PPR2252510.1
PF01535.19PPR2943200.69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.710
SRR2545915Juvenile tuber20.620
SRP108465SRR5643513five period of Gastrodia elata26.700
SRR5643514five period of Gastrodia elata18.470
SRR5643515five period of Gastrodia elata21.710
SRR5643524five period of Gastrodia elata19.070
SRR5643525five period of Gastrodia elata19.650
SRR5643528five period of Gastrodia elata16.400
SRR5643658five period of Gastrodia elata20.550
SRR5643659five period of Gastrodia elata34.650
SRR5643660five period of Gastrodia elata41.130
SRR5643661five period of Gastrodia elata36.060
SRR5643662five period of Gastrodia elata37.820
SRR5643663five period of Gastrodia elata36.590
SRR5643664five period of Gastrodia elata36.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.550
SRR6049655Rhizomagastrodiae_C368-T10_good_125.220
SRR6049656Rhizomagastrodiae_C368-T07_good_123.940
SRR6049657Rhizomagastrodiae_C368-T07_good_124.770
SRR6049658Rhizomagastrodiae_C368-T04_good_121.910
SRR6049659Rhizomagastrodiae_C368-T04_good_125.000
SRR6049660Rhizomagastrodiae_C368-T01_good_123.860
SRR6049661Rhizomagastrodiae_C368-T04_good_122.030
SRR6049662Rhizomagastrodiae_C368-T01_good_120.190
SRR6049663Rhizomagastrodiae_C368-T01_good_122.050
SRR6049664Rhizomagastrodiae_C368-T10_good_121.260
SRR6049665Rhizomagastrodiae_C368-T10_good_121.260
SRP279888GastroGastrodia elata tuber 23.11
JuvenJuvenile tuber28.74
Mother_GastroMother tuber of Gastrodia elata 18.22
Mother_JuvenMother tuber of Juvenile 22.44