Detail information of GWHGAAEX005144/evm.TU.scaffold_16.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743829936|ref|XP_010934285.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9SS83|PP220_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor) |
| trEMBL | tr|E0CQN7|E0CQN7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI19966.3} |
| TAIR | AT3G09040 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 2707363 | 2710558 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005144
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 89 | 112 | 0.12 |
| PF13041.5 | PPR_2 | 114 | 163 | 8.60E-08 |
| PF01535.19 | PPR | 191 | 216 | 0.11 |
| PF01535.19 | PPR | 219 | 248 | 0.0001 |
| PF01535.19 | PPR | 259 | 279 | 0.84 |
| PF13041.5 | PPR_2 | 281 | 328 | 6.40E-09 |
| PF13041.5 | PPR_2 | 382 | 430 | 6.20E-08 |
| PF13041.5 | PPR_2 | 484 | 531 | 3.30E-09 |
| PF13041.5 | PPR_2 | 590 | 631 | 6.30E-08 |
| PF01535.19 | PPR | 690 | 718 | 7.70E-06 |
| PF01535.19 | PPR | 764 | 784 | 0.085 |
| PF13041.5 | PPR_2 | 790 | 830 | 3.60E-07 |
| PF01535.19 | PPR | 867 | 888 | 0.76 |
| PF01535.19 | PPR | 931 | 959 | 0.43 |
| PF14432.5 | DYW_deaminase | 963 | 1010 | 1.00E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.920 |
| SRR2545915 | Juvenile tuber | 0.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.700 |
| SRR5643514 | five period of Gastrodia elata | 1.890 | |
| SRR5643515 | five period of Gastrodia elata | 2.460 | |
| SRR5643524 | five period of Gastrodia elata | 1.450 | |
| SRR5643525 | five period of Gastrodia elata | 0.690 | |
| SRR5643528 | five period of Gastrodia elata | 0.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.390 | |
| SRR5643659 | five period of Gastrodia elata | 3.750 | |
| SRR5643660 | five period of Gastrodia elata | 2.790 | |
| SRR5643661 | five period of Gastrodia elata | 2.400 | |
| SRR5643662 | five period of Gastrodia elata | 4.280 | |
| SRR5643663 | five period of Gastrodia elata | 2.760 | |
| SRR5643664 | five period of Gastrodia elata | 2.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.12 |
| Juven | Juvenile tuber | 0.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.50 | |
| Mother_Juven | Mother tuber of Juvenile | 0.36 |