Detail information of GWHGAAEX005146/evm.TU.scaffold_16.89_evm.TU.scaffold_16.91


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|310825385|ref|YP_003957743.1|1.00E-47hydroxymethylglutaryl-CoA synthase [Stigmatella aurantiaca DW4/3-1]
KOGKOG13930Hydroxymethylglutaryl-CoA synthase
nrgi|672200149|ref|XP_008777803.1|0PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Phoenix dactylifera]
Swissprottr|P54873|HMCS_ARATH0Hydroxymethylglutaryl-CoA synthase
trEMBLtr|W0IAY2|W0IAY2_NARTA0Hydroxymethylglutaryl coenzyme A synthase {ECO:0000313|EMBL:AHF81872.1}
TAIRAT4G118200hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002427243382749421+
Transcript Sequence

Network for GWHGAAEX005146

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01154.16HMG_CoA_synt_N61771.50E-82
PF08540.9HMG_CoA_synt_C1784522.50E-107
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01641E2.3.3.10 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Cysteine and methionine metabolismmap00270
Terpenoid backbone biosynthesismap00900
PPAR signaling pathwaymap03320

Gene Ontology

GO term OntologyName
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0004421Molecular Functionhydroxymethylglutaryl-CoA synthase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.140
SRR2545915Juvenile tuber60.750
SRP108465SRR5643513five period of Gastrodia elata89.940
SRR5643514five period of Gastrodia elata96.200
SRR5643515five period of Gastrodia elata70.410
SRR5643524five period of Gastrodia elata89.620
SRR5643525five period of Gastrodia elata99.180
SRR5643528five period of Gastrodia elata98.440
SRR5643658five period of Gastrodia elata141.440
SRR5643659five period of Gastrodia elata48.880
SRR5643660five period of Gastrodia elata53.700
SRR5643661five period of Gastrodia elata52.180
SRR5643662five period of Gastrodia elata38.890
SRR5643663five period of Gastrodia elata41.390
SRR5643664five period of Gastrodia elata43.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_184.380
SRR6049655Rhizomagastrodiae_C368-T10_good_1122.770
SRR6049656Rhizomagastrodiae_C368-T07_good_1111.680
SRR6049657Rhizomagastrodiae_C368-T07_good_190.220
SRR6049658Rhizomagastrodiae_C368-T04_good_166.870
SRR6049659Rhizomagastrodiae_C368-T04_good_162.980
SRR6049660Rhizomagastrodiae_C368-T01_good_190.560
SRR6049661Rhizomagastrodiae_C368-T04_good_196.480
SRR6049662Rhizomagastrodiae_C368-T01_good_1114.310
SRR6049663Rhizomagastrodiae_C368-T01_good_185.180
SRR6049664Rhizomagastrodiae_C368-T10_good_1125.040
SRR6049665Rhizomagastrodiae_C368-T10_good_1125.040
SRP279888GastroGastrodia elata tuber 51.29
JuvenJuvenile tuber136.59
Mother_GastroMother tuber of Gastrodia elata 81.45
Mother_JuvenMother tuber of Juvenile 86.89