Detail information of GWHGAAEX005147/evm.TU.scaffold_16.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338175248|ref|YP_004652058.1| | 5.00E-06 | hypothetical protein PUV_12540 [Parachlamydia acanthamoebae UV-7] |
| KOG | KOG0160 | 0 | Myosin class V heavy chain |
| nr | gi|743776906|ref|XP_010918867.1| | 0 | PREDICTED: myosin-6-like [Elaeis guineensis] |
| Swissprot | tr|F4I460|MYO8_ARATH | 0 | Myosin-8 |
| trEMBL | tr|B9GRA7|B9GRA7_POPTR | 0 | Myosin heavy chain family protein {ECO:0000313|EMBL:EEE82373.1} |
| TAIR | AT5G43900 | 0 | myosin 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 2816027 | 2855487 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005147
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02736.18 | Myosin_N | 11 | 48 | 9.50E-10 |
| PF00063.20 | Myosin_head | 64 | 720 | 3.20E-256 |
| PF00612.26 | IQ | 737 | 755 | 0.11 |
| PF00612.26 | IQ | 759 | 778 | 0.047 |
| PF00612.26 | IQ | 785 | 803 | 0.0087 |
| PF00612.26 | IQ | 809 | 826 | 0.1 |
| PF00612.26 | IQ | 832 | 851 | 0.0001 |
| PF00612.26 | IQ | 856 | 875 | 0.002 |
| PF01843.18 | DIL | 1333 | 1437 | 4.90E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007015 | Biological Process | actin filament organization |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003774 | Molecular Function | motor activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016459 | Cellular Component | myosin complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.620 |
| SRR2545915 | Juvenile tuber | 15.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.650 |
| SRR5643514 | five period of Gastrodia elata | 17.260 | |
| SRR5643515 | five period of Gastrodia elata | 23.980 | |
| SRR5643524 | five period of Gastrodia elata | 15.260 | |
| SRR5643525 | five period of Gastrodia elata | 38.280 | |
| SRR5643528 | five period of Gastrodia elata | 28.500 | |
| SRR5643658 | five period of Gastrodia elata | 26.760 | |
| SRR5643659 | five period of Gastrodia elata | 12.890 | |
| SRR5643660 | five period of Gastrodia elata | 13.020 | |
| SRR5643661 | five period of Gastrodia elata | 14.240 | |
| SRR5643662 | five period of Gastrodia elata | 22.080 | |
| SRR5643663 | five period of Gastrodia elata | 21.430 | |
| SRR5643664 | five period of Gastrodia elata | 9.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.49 |
| Juven | Juvenile tuber | 10.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.15 | |
| Mother_Juven | Mother tuber of Juvenile | 48.58 |