Detail information of GWHGAAEX005148/evm.TU.scaffold_16.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|334147267|ref|YP_004510196.1| | 3.00E-20 | 3'-5' exonuclease domain-containing protein [Porphyromonas gingivalis TDC60] |
| KOG | KOG4373 | 1.00E-63 | Predicted 3'-5' exonuclease |
| nr | gi|743776908|ref|XP_010918868.1| | 1.56E-104 | PREDICTED: Werner Syndrome-like exonuclease isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q84LH3|WEX_ARATH | 1.00E-67 | Werner Syndrome-like exonuclease |
| trEMBL | tr|K3Y906|K3Y906_SETIT | 9.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si010698m} |
| TAIR | AT4G13870 | 1.00E-63 | Werner syndrome-like exonuclease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 2878007 | 2910565 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005148
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01612.19 | DNA_pol_A_exo1 | 122 | 284 | 3.00E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.760 |
| SRR2545915 | Juvenile tuber | 34.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.280 |
| SRR5643514 | five period of Gastrodia elata | 11.850 | |
| SRR5643515 | five period of Gastrodia elata | 10.820 | |
| SRR5643524 | five period of Gastrodia elata | 12.070 | |
| SRR5643525 | five period of Gastrodia elata | 8.630 | |
| SRR5643528 | five period of Gastrodia elata | 9.380 | |
| SRR5643658 | five period of Gastrodia elata | 9.490 | |
| SRR5643659 | five period of Gastrodia elata | 25.400 | |
| SRR5643660 | five period of Gastrodia elata | 21.630 | |
| SRR5643661 | five period of Gastrodia elata | 19.390 | |
| SRR5643662 | five period of Gastrodia elata | 14.390 | |
| SRR5643663 | five period of Gastrodia elata | 19.510 | |
| SRR5643664 | five period of Gastrodia elata | 14.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.54 |
| Juven | Juvenile tuber | 13.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.90 | |
| Mother_Juven | Mother tuber of Juvenile | 9.01 |