Gene detail

Detail information of GWHGAAEX005151/evm.TU.scaffold_16.99

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	1.00E-41	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672175787\|ref\|XP_008807959.1\|	1.63E-81	PREDICTED: uncharacterized protein LOC103720151 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9M2S6\|SDIR1_ARATH	7.00E-18	E3 ubiquitin-protein ligase SDIR1
trEMBL	tr\|M1CWG8\|M1CWG8_SOLTU	6.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400076255}
TAIR	AT1G04790	1.00E-41	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3027705	3083049	-

Transcript Sequence
>GWHTAAEX005151 TCCGCAACTGACGTCCAGGTTTGTTCTTCGACAACTTCGCAATCGTCTCTCCTGCGATCTCTCTTTTTCTTATTGGATCTCCAATATTTTGAAAAGAATGGATTCTGAGATGGTGATGGAAGTTCCTGACACACCTGAGAGGGCGGCATTTGCTCGTTCAACTGCTGAATCATCTTCAAGTACCTGTGGAATTAAAGACAAGCATTCTTTATCCAAACAATTTTTTGAGCCAATGACTAAAACCTACTCTCGCCAAATGAAGAAGTACGATCCCCATGATTTTAATGGTAATGGGACAAAGCTGGTAGATAGTGATTTTCTGTTCTCTCAGGCCAGATTTGCCCGCCTCATTTCTGACACCTCTGATAATGGAAAACATTTCTGCAAAAGTTCTGCTAAACCTGAGCAAACTGGTGTCTCGAATGATAGTGGGACAAATTTGAACATCATTGATTTAAGTCAAGAAAGTTCACCCTTTTCACATCCTACTAAATATAGGACCTTAAGACACAGAGAAGAGAAGCATCTTGTTAGGCAGAGCAAAAGAAATCAAATGAGCAATTATGACAAACTTGCTATTGTATCCTCAGAATCAATGGAAGATCTTAGGAAAGAGAGGAATTATGCAGGCAACTCTTTAAAAACTTTTGTTAGCCTAAGTAATGCAAATGAAGCAGATAATATCAATTGTAGCAACATGGCGGTATCAACTGGCAAAGAAAAGGTACCTGCTCCCCAGATGAATTCACTTACCGGAAATGAACGATTACAGTCAAGAGATCTTGAATTTTCTTTTCCAGTAGGCAATTCACAGCAGAATAAGCTGTCTAGTGGTTGCTTATTGCCATGTGATTTAGCAAACAGCACCGACAATTGTCTAGCTGAGGTGTATTACAAAGAGCATAAAAATTCTGATAATCAAGGGGCTTCTTCTTCTTATTCATCATCATCTTCTTATTTTTCTTCTGTTGTTAAAAACCTAGATAGCAAAATTGGAAACGGATCATGCGAGGATTTTCAATCCATTAACACGCAGGCAAGTTATAGACATTTTGAGCTGGATTTGCACCCTAAAAATAATGGTAGCAGGAGACTAGTGCGTAATGGATGCATTTCTCCCTCAAACATATCAAGAAATAAAACTGCTGCAAAGGATAAAGGGCTTGAGGGTGGAAGTGCCATTTCTAGCAAAATACCCAACAATAACTCTTTTCAGTCTTTACACCGTTCTAATTTTGAATGCAGAATCGCTGACAGAGGAAAAGGAAAGGAATTAATGAATAATGATTTTTTTGGTAGTTCCCAATGCACTGTAGTTATTCCACAATTAGGAAGATCTGGTAAGGTACCTCAAAAGGATATGACCATCATTTCAGACGTGGATTTTGATAATGACAAAATTTTGATTGATGGATATGGGGAGAAAAATAAGCTCGTGGGAAGTTCGTCTCTTCTTTCTTCCTCAAATGTTTCCTGCTTTTCTGAGAGTGAGAATATGCCGTGTTATTTATCTAGTTCTGATAGTGAAAATGCACGCAAGGGTAATGAGGATGCATTCCAATGTGGACAAAACAGTACTCTGTCTCAAGGAAGTTTAAAATTGAACTCTGAAGCTCCACAGAGTACTGGTAAACGGAAAATTAGCTTTGCGCACATTAATACTTTTGAATGCTCAAGTTCAACTGTTCATACCCCAAGGATACCATATGACCGGACATCCTTGAAATCTTCAAACACACGATCAACAAGAAGTCGGAAATCAGTGAGAGTTGACACTGCGATGGCACCAATTGTAGAGCTTGATGAATTGGACACTACCACTCAAGAGGAAAATCGTGTACTTTCTGATGAATTTATTGCTAAGACTATACAACTTGAGGCGGATGAGGCACTAGCCCGCCAGCTCCAAGAACAATTCTACCTGGAATCACCACCAGTGGGAGATGCAGAGGCTCAGAGAGAGGCGTTACTTCCTGCATTGTTGGAGAGACAAAGATTCCTTCATTCATCTACAAGAATTGCAGCACGTGCTCGAACAGATGATAGAATTGGCCGTATAAGGAGAAACACCAGCAGGCCTAGCATGAGTATGGAAGAGAGGTATGATTTTCTTGAAGCACTTGAGGCAGCATTTGAAAGTGGTGGCATGACAACTGATGATCTATTTCTTGATATTCATCAAGATTTTAACGAGAATGATTATGAGATGCTGTTGGCTCTTGATGAGAATAACCACAGACATGTTGGAGCATCTGAGAGGCAGATCAACAGCTTGCCGCAGTCATTAATCAAGGAACATAATTCTGATTCTAAAGAAGCTTGTGCTGTTTGCCTTGAAGTTCCTTCTATGGGGGATATAATCCGTCATTTACCGTGTTTGCATAAATTCCACAAAGATTGCATTGACAAGTGGCTTCGAAGGAAGCGATCATGTCCAATATGTAAGTGTGGGATCAACTGATTAATTTTCCTTTTATCTTGAAGGAGGCCCATTGAAACAATTCTATAGATTGTTTTGATTTTTTTTGTTTGTTAAACATTTTCTTATGAAGGCATTATTGCAATATTACCTATCACTTGGCATACAAAGTAGAGAAAGAGAGATCAGAGAATTTTCTCTATAGTTTTTTGCCACATGGCTTTTATGGAGAAAGTAATTCAGCATTGATTGGTTTAATTTATTTTTATTTATTCATTCCTCGCATAGCTCCAATTTTTTGTGTTTTACTTATTTTTCATTGAACACTGTAATTTGTTGCTTATATCAGTACACAATGGTCTGTCTTTTGTAATCAGTACTAGGGATCTGATTTTAAGGGTAAGTTGGATGTTAGTTTTATAAAGATTGAAGATTGG

Network for GWHGAAEX005151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	741	783	5.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.230
SRP064423	SRR2545915	Juvenile tuber	50.510
SRP108465	SRR5643513	five period of Gastrodia elata	17.840
	SRR5643514	five period of Gastrodia elata	28.810
	SRR5643515	five period of Gastrodia elata	22.590
	SRR5643524	five period of Gastrodia elata	25.260
	SRR5643525	five period of Gastrodia elata	10.070
	SRR5643528	five period of Gastrodia elata	10.900
	SRR5643658	five period of Gastrodia elata	12.580
	SRR5643659	five period of Gastrodia elata	16.820
	SRR5643660	five period of Gastrodia elata	18.490
	SRR5643661	five period of Gastrodia elata	14.700
	SRR5643662	five period of Gastrodia elata	14.160
	SRR5643663	five period of Gastrodia elata	18.260
	SRR5643664	five period of Gastrodia elata	16.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.790
SRP279888	Gastro	Gastrodia elata tuber	28.15
	Juven	Juvenile tuber	62.24
	Mother_Gastro	Mother tuber of Gastrodia elata	37.75
	Mother_Juven	Mother tuber of Juvenile	37.92