Detail information of GWHGAAEX005153/evm.TU.scaffold_16.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 4.00E-64 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672184202|ref|XP_008812406.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase 2 [Phoenix dactylifera] |
| Swissprot | tr|C0LGV1|RCH1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase RCH1 (Precursor) |
| trEMBL | tr|J3LVE6|J3LVE6_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G11210.1} |
| TAIR | AT3G24240 | 0 | Leucine-rich repeat receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 3201045 | 3204911 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005153
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 30 | 68 | 0.00028 |
| PF13855.5 | LRR_8 | 97 | 158 | 3.70E-08 |
| PF13855.5 | LRR_8 | 315 | 375 | 1.10E-06 |
| PF13855.5 | LRR_8 | 460 | 519 | 5.10E-07 |
| PF00069.24 | Pkinase | 785 | 1061 | 6.70E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.290 |
| SRR2545915 | Juvenile tuber | 0.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.380 |
| SRR5643514 | five period of Gastrodia elata | 10.630 | |
| SRR5643515 | five period of Gastrodia elata | 7.260 | |
| SRR5643524 | five period of Gastrodia elata | 7.420 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.550 | |
| SRR5643658 | five period of Gastrodia elata | 0.290 | |
| SRR5643659 | five period of Gastrodia elata | 1.030 | |
| SRR5643660 | five period of Gastrodia elata | 0.260 | |
| SRR5643661 | five period of Gastrodia elata | 0.570 | |
| SRR5643662 | five period of Gastrodia elata | 0.560 | |
| SRR5643663 | five period of Gastrodia elata | 0.540 | |
| SRR5643664 | five period of Gastrodia elata | 0.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.20 |
| Juven | Juvenile tuber | 25.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.17 | |
| Mother_Juven | Mother tuber of Juvenile | 2.25 |