Gene detail

Detail information of GWHGAAEX005154/evm.TU.scaffold_16.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|163854545\|ref\|YP_001628843.1\|	1.00E-26	hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
nr	gi\|694995740\|ref\|XP_009390186.1\|	0	PREDICTED: probable pectate lyase 5 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q93Z04\|PLY13_ARATH	0	Probable pectate lyase 13 (Precursor)
trEMBL	tr\|I1I4F1\|I1I4F1_BRADI	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR	AT3G54920_1	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3215155	3218161	-

Transcript Sequence
>GWHTAAEX005154 TGGGCATGTATGACTTCTGTATTAATTCATTAAGAAAAAAGAAGGAGAAAAGAAAACAGAGTGATGCAAATCCACCTAAGAAAGGCAAAACTACGAGAAAGAAGAGAGGAGCCTTAATCTGCCAAAGGCAGGCGGCGCCGTTTGTGGACAAGACAAGCTATCTATGTTGCAAAAGCAGCCAGAAAGAGCTTAGAATATGTATAAGAAAAGCACACATATACTTGGATTAAGGACAAAGCTTTAATTTGTTGAGGCTTTCGCCTAAATGGCACTCTAGATGTTAATTTTGAATGTGTATTCCCCAATAAAGTAGAAGCATATTGTTCTATGAGAAATGCCATGCAGCATTATTATATCTCATATTACCACACTAAGAAGGATTATGATATAACAAAGCTTTAATAAGCATAGGCCTGGTTCATCTAAAATTCAAGTCTTGAACCGATTCTCAATTCTCAAAGGGGAGAAGGAGAGTTGTGATTCACTAATCGCCGCCCCCCTCCTTCTCCGGCTTCTTGTCTCTTTCCTTGAACCACCTCAACATCAAATGACCCACAAAATATCTCTCACAATCCCCATTAGCTTTTGAAACCCCTCGCTCTAAATACAAAGAGTTATAAATACCCATTATTCCATATGTTATTTTCCTATGTTTCCATAAAATACCCTATTCTTTGTTCCTAACCCTCAGTCCTAAAGCACCACTAAAATAGTAAAATGCTCCTCCCCTTCCTCCTCCTCCACAACCTCCTTCACTACTCCTCGGCCTCGCACCAGCTACTCCCCCATAACTCCACTCACCCAGACCCAGACTCGGCCGCCCGCGAACTCCTACACCGTGTCCGCCACTCCCGCCTCCTTGCCCTCTCGGACCCCTCCCAGTGCCTGACAGGCAACCCCATCGACGACTGTTGGCGCTGTTCATCCGTCGACTGGCGCGCTGACCGCTCCCGCCTCGCCGACTGTTCCATAGGCTTCGGCCGCGGCGCCCTCGGCGGGAAGAACGGCAGGCTCTACGTGGTTACCGACTCCTCGGACTCGAGCCCGGCAAACCCGGTCCCTGGCACCCTCCGCCACGCCGTCATCCAGAACGAGCCCCTCTGGATTGTCTTCTCCGCCGACATGTCCATCCACCTCAATGAGGAGCTCCTCGTCAACAGCTTCAAGACCCTCGATGGCCGCGGCGCTGACGTCCACATCGCCGGCGGCGCCTGCATCACCCTCCAGTACGTCTCCAATGTCATCATCCACAACCTCCACGTGCACGACTGCGTGCCCGCCGGGAACGCGATCGTCCGCTCCTCCCCGACCCACGCCGGCTTCCGCGGTATCTCCGATGGCGACGGCATCTCCATCTTCGGCAGCCGCGACGTGTGGATCGACCACTGCTCCCTCTCCAACTGCGCCGATGGGCTCATCGACGCCATCATGGGCTCCACGGCGATCACCGTCTCCAACAGCCACTTCGCCAGGCACAACGAAGTGATGCTCATGGGCCACCGCGATGACTACGAGCCCGACTCTGTGATGCAGGTCACCATCGCTTTCAACCGCTTCGGCGAGAAACTCGTGCAGCGGATGCCGCGCTGCCGTCGCGGCTACTTCCACATCGTCAACAACGACTACACCGAGTGGGAGATGTACGCCATCGGAGGCAGCGCAAATCCCACCGTTAACAGCCAGGGAAACCGCTACATTGCCCCTCCCGACCCGAATGCTAAGCAGGTGACGAGGAGGATAGAGACGGAGGAGGAGGAGTGGAGCGGTTGGAATTGGAGGACAGAGGGGGATATAATGGTCAACGGCGCCTTCTTCGTTCCCTCCGGCCAGGGTTTAGAGATCTACATGAAGGCCTCTAGCGTCCAGCCAAAATCCGTCGCTCTCATTGACCAGCTCACCCGCAACGCAGGCGTCCTTCCAGGACTTCGGGACAAAGGTAGAGGGAGTCAAGGAGCTTACAACGGGGGAGGCACTCAGGGCATGGCCATTGATGGCGGTGGAGGCGGTGCAGGCGATGGCGAAGGAGTATCTGGATATTTTGGGATGTCGCTTGGGAGTGGCACTCCATCGCTGCCGTCCGATTTCCAGATGCTTTTGTCATTATCCATTATTTTTTTCTTCACGTTCATGTATCTGCCCCCATTAATTGTAGCTGGTGCTCAAATGAAGTTTATTTTACTATATCTTTAGTACTTAACTCAATGAAGGCAAAATTAGTCC

Network for GWHGAAEX005154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.18	Pec_lyase_C	145	325	1.80E-20

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.310
SRP064423	SRR2545915	Juvenile tuber	0.270
SRP108465	SRR5643513	five period of Gastrodia elata	14.550
	SRR5643514	five period of Gastrodia elata	15.210
	SRR5643515	five period of Gastrodia elata	5.030
	SRR5643524	five period of Gastrodia elata	9.150
	SRR5643525	five period of Gastrodia elata	3.250
	SRR5643528	five period of Gastrodia elata	5.480
	SRR5643658	five period of Gastrodia elata	1.540
	SRR5643659	five period of Gastrodia elata	0.830
	SRR5643660	five period of Gastrodia elata	0.060
	SRR5643661	five period of Gastrodia elata	1.150
	SRR5643662	five period of Gastrodia elata	2.620
	SRR5643663	five period of Gastrodia elata	1.790
	SRR5643664	five period of Gastrodia elata	2.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.740
SRP279888	Gastro	Gastrodia elata tuber	1.51
	Juven	Juvenile tuber	15.70
	Mother_Gastro	Mother tuber of Gastrodia elata	3.43
	Mother_Juven	Mother tuber of Juvenile	1.80