Gene detail

Detail information of GWHGAAEX005158/evm.TU.scaffold_16.108

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672175292\|ref\|XP_008807695.1\|	7.68E-168	PREDICTED: protein UPSTREAM OF FLC isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q9LX14\|UFC_ARATH	1.00E-31	Protein UPSTREAM OF FLC
trEMBL	tr\|M0TPZ2\|M0TPZ2_MUSAM	2.00E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P12890_001}
TAIR	AT3G46110	2.00E-64	Domain of unknown function (DUF966)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3226163	3230375	-

Transcript Sequence
>GWHTAAEX005158 AAAAACTTTCTTTTGCTGCAGTACCTTCTCTCTCTCTTACTTTTTCTCTCAACAGTCTCTCCTCTCTCCCTCCCGCAGTACTCCGCCCCAAAACCCCAAATATTGACCCTTCGAAGCCATTAATGCTGCTCTGCACCTCCAAAGCAAGAAACTTTACCGATATCAATGCTGGAAACAGAAGAGATTGAAGGCATGATGGGAAAGTACGGAGGTCCGCTGAGCCCTACGCCTCCAAGGAGAAAGATCCCCGTTCTGTATTACCTCTGCAGGAATCGGCATCTAGAGCAACCCCATTTCATGGAAGTTCCTCTTTCCTCTCTGGAAGGTCTTTATCTTAGAGATGTTATAAATCGGCTAAATGTGCTAAGAGGAAAAGGAATGCCGGTTATGTATTCTTGGTCCTGTAAAAGGAATTATAAGAATGGGTTTGTGTGGCATGACCTTTCCAAGGATGATTTGATTTTTCCTACAAATGGAAATGAGTTTGTGCTCAAGGGCTCTGAGCTATTGGAGCAATCCCCCTTGGGTAAGGAATATTATAGATTGCAAAATTCAATTGTAGCTCAATCAGAAACTCCCACTTCTTCAAGAACCAATGAGACCTCTTCCTCATCCTCTCAATCCCCTCAATCACAATGCTTTTTGGCAAATCAAGTTAATTATCCCTGTCCTAAGGCAGCTTCCCCAAGTTTAGCTGAGCGCAGGGTATGCAAGTCTAGAATTGCCGCAGATGCTTCAACACAGACTGATGATGATGGGAGAAGAGCTCCTAAAAGTAAGAATAATGCCTGCAATCGAGGAGTTTCTACTGATGATACCTCAGTGGATTTTGAGTACGATCGAAACTGGCCGAATCGGGCCGTTGTGTCGAAGGAGGAATCTGAGCCGTGCGGCGAAAAGATCTCTCCACCGCCAACTTCGTCAAGTTCTTCCTCCGGTAGAAAGATGGAGACATTGGAGTCTTTAATCAGAGCGGATGCCGATGTGATAAAGAGCTTCCGCATACTTGAAGAAGATGAGATTCTGATTCCTACCGCGCCGAGATTAAAGGCGACGAATGTGCTTATGCAGCTCATTACATGTGGTTCTATTGCAGTGAAGGATCACCAAAGCTTTGGTCTTGTTCCAACATACAAGCCAAAGTTTTCTCACATGAATACTGCATCCCCGATGTTCTCAAACACTATGGTGACCAGAGAGTTTGACTGCTTTTCTGAGAATCCAAAGTATTTAGGTTTGAGATTGGAAGATAAGGAGTATTTCAGTGGGAGCTTGCTTGAAACTAAGAAGCATAAGGAAGACATACGAGAGAGCTTGCCTACTCTCAAAAGATCCTCCTCCTATAATTCTGACAGGAGGGATGATGAAAGGTTTGAGGATTCATCTCGCTTGAAATGCCTTCCTCAACCGTCTAAGATTTTGTCGACCAAGCAGCCATCAATCCTTGACTGCCAGAGAAATTCTTCTGCCGGCCAAGAATGTAATGGAAGCAAGAGATTTTCCGATCTTTCGTCCGTCAAAGGATCGTTCACGAGGCCAGATTCTTTGACCGAGGATGAACGAATGACGATCAAGGTTGAGGAAAGTTAAGTCCTTTCTCCCCTCAGCAGCTTTTGACATTTTGGTTATTCATGTCCTGCTCATTGAAACAGAAATATCCTATTATTCCAGCAGGCTTATTTCAGGAGCTCGAGTTATAATTCAATCAAGAGCCTCATAAAAGAATGATAGTGAAGATGGCTCAAGTTCTCAGAGGAGGAAAAACAGGCTTTTAGTTGCTAAGGCACTCTTTTATGACTGTTATAGAGATTAGAGAAACAGGTTTGCAAGTTCTTATGATGCTGCTTTCGGATAATGTAGATATTATGTTAATTTGCTGGCTGCTAATTTGATGATAAATGGTGAAAAACACTCAAATGATCAAAAGATTCAATTACTGCTTCACCAGTTTTTGAATTCAGCACTGATTACATTGTTAGATCGATGTCAGATCAGTTATTTGACTGATTTTGGAAATATTAAAAAGGAAAGGGTTATGCCAAACATACCTAAGTCTATGCTCAAAATGTGTGAGATCCTACTTGGCATATAGGACTCTGTTACATTACCCTCTACCTCACGAGATCTGCCTCCAGAAAACCTAACCCTAAAAAGCACCTAACTTGCATGCCGGCCTTGCTTCCGTGGAGAAGAGGACAATGGGGAAGAGCAACACTTCAATAAAAAAAAACTTGGTGCAGACTTTTCCTATGGGGCATCTATTTGCCACTTAAGATCTCACGTGGGTAAATTATAAAAATATTGGTGATTAATGTAGTATTGCAGGCCTTTTTTAAAGATGACTAAACCTAGTAACTCTGATGAAAATGCCTTGTGTGAATACAGCGAAGATGCTAAATCCAGCAAAACATTCAATCTGCTATGTGGAGCCCAAATCCCTGCATTATTTGAGTGGGCCACATCTGTGTGCCATATTAAAGCCTGCAAACAACCTATATATTTTATAATAAGAATAAATTAGTCTTGTATATATATTTGTTTGTAGGTTAAGAGAAAATTTCTCTTATATTTGATCAATTTATTTATTTGCAAAATCGAAGTTGTTATCTATCCGTGTGTTATATACTAAG

Network for GWHGAAEX005158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module12

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06136.12	DUF966	27	398	2.70E-135

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.480
SRP064423	SRR2545915	Juvenile tuber	9.510
SRP108465	SRR5643513	five period of Gastrodia elata	9.390
	SRR5643514	five period of Gastrodia elata	8.630
	SRR5643515	five period of Gastrodia elata	7.950
	SRR5643524	five period of Gastrodia elata	11.580
	SRR5643525	five period of Gastrodia elata	7.120
	SRR5643528	five period of Gastrodia elata	22.890
	SRR5643658	five period of Gastrodia elata	5.210
	SRR5643659	five period of Gastrodia elata	1.720
	SRR5643660	five period of Gastrodia elata	1.450
	SRR5643661	five period of Gastrodia elata	1.080
	SRR5643662	five period of Gastrodia elata	2.190
	SRR5643663	five period of Gastrodia elata	2.240
	SRR5643664	five period of Gastrodia elata	2.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.180
SRP279888	Gastro	Gastrodia elata tuber	4.75
	Juven	Juvenile tuber	5.09
	Mother_Gastro	Mother tuber of Gastrodia elata	41.17
	Mother_Juven	Mother tuber of Juvenile	9.23