Detail information of GWHGAAEX005160/evm.TU.scaffold_16.110


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297565842|ref|YP_003684814.1|0alpha-1,6-glucosidase [Meiothermus silvanus DSM 9946]
KOGKOG047001,4-alpha-glucan branching enzyme/starch branching enzyme II
nrgi|743777007|ref|XP_010918919.1|0PREDICTED: pullulanase 1, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q8GTR4|PULA1_ARATH0Pullulanase 1, chloroplastic (Precursor)
trEMBLtr|D7TM28|D7TM28_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31395.3}
TAIRAT5G043600limit dextrinase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002432905453453402+
Transcript Sequence

Network for GWHGAAEX005160

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02922.17CBM_482112961.40E-11
PF11852.7DUF33727969657.10E-62
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0051060Molecular Functionpullulanase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.940
SRR2545915Juvenile tuber23.720
SRP108465SRR5643513five period of Gastrodia elata13.610
SRR5643514five period of Gastrodia elata13.940
SRR5643515five period of Gastrodia elata15.020
SRR5643524five period of Gastrodia elata12.340
SRR5643525five period of Gastrodia elata15.940
SRR5643528five period of Gastrodia elata14.350
SRR5643658five period of Gastrodia elata14.150
SRR5643659five period of Gastrodia elata12.220
SRR5643660five period of Gastrodia elata13.160
SRR5643661five period of Gastrodia elata9.600
SRR5643662five period of Gastrodia elata13.050
SRR5643663five period of Gastrodia elata15.350
SRR5643664five period of Gastrodia elata16.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.490
SRR6049655Rhizomagastrodiae_C368-T10_good_120.360
SRR6049656Rhizomagastrodiae_C368-T07_good_122.200
SRR6049657Rhizomagastrodiae_C368-T07_good_131.270
SRR6049658Rhizomagastrodiae_C368-T04_good_128.590
SRR6049659Rhizomagastrodiae_C368-T04_good_132.930
SRR6049660Rhizomagastrodiae_C368-T01_good_126.480
SRR6049661Rhizomagastrodiae_C368-T04_good_127.850
SRR6049662Rhizomagastrodiae_C368-T01_good_123.120
SRR6049663Rhizomagastrodiae_C368-T01_good_122.020
SRR6049664Rhizomagastrodiae_C368-T10_good_114.870
SRR6049665Rhizomagastrodiae_C368-T10_good_114.870
SRP279888GastroGastrodia elata tuber 19.28
JuvenJuvenile tuber15.31
Mother_GastroMother tuber of Gastrodia elata 10.37
Mother_JuvenMother tuber of Juvenile 13.96