Detail information of GWHGAAEX005162/evm.TU.scaffold_16.113


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|1.00E-19hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00802.00E-101GTPase Rab18, small G protein superfamily
nrgi|672129632|ref|XP_008788327.1|2.57E-121PREDICTED: ras-related protein RABC2a-like [Phoenix dactylifera]
Swissprottr|O49841|RAC2A_ARATH9.00E-108Ras-related protein RABC2a
trEMBLtr|A0A061ESE3|A0A061ESE3_THECC3.00E-113Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a {ECO:0000313|EMBL:EOY07975.1}
TAIRAT5G035302.00E-101RAB GTPase homolog C2A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002435434303578359-
Transcript Sequence

Network for GWHGAAEX005162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras91702.70E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.980
SRR2545915Juvenile tuber6.390
SRP108465SRR5643513five period of Gastrodia elata11.200
SRR5643514five period of Gastrodia elata10.720
SRR5643515five period of Gastrodia elata11.310
SRR5643524five period of Gastrodia elata10.370
SRR5643525five period of Gastrodia elata21.050
SRR5643528five period of Gastrodia elata18.710
SRR5643658five period of Gastrodia elata18.960
SRR5643659five period of Gastrodia elata6.370
SRR5643660five period of Gastrodia elata6.940
SRR5643661five period of Gastrodia elata5.190
SRR5643662five period of Gastrodia elata5.760
SRR5643663five period of Gastrodia elata7.540
SRR5643664five period of Gastrodia elata7.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.580
SRR6049655Rhizomagastrodiae_C368-T10_good_116.300
SRR6049656Rhizomagastrodiae_C368-T07_good_122.300
SRR6049657Rhizomagastrodiae_C368-T07_good_120.680
SRR6049658Rhizomagastrodiae_C368-T04_good_134.230
SRR6049659Rhizomagastrodiae_C368-T04_good_137.780
SRR6049660Rhizomagastrodiae_C368-T01_good_131.360
SRR6049661Rhizomagastrodiae_C368-T04_good_136.930
SRR6049662Rhizomagastrodiae_C368-T01_good_119.980
SRR6049663Rhizomagastrodiae_C368-T01_good_125.720
SRR6049664Rhizomagastrodiae_C368-T10_good_117.110
SRR6049665Rhizomagastrodiae_C368-T10_good_117.110
SRP279888GastroGastrodia elata tuber 16.37
JuvenJuvenile tuber5.89
Mother_GastroMother tuber of Gastrodia elata 29.30
Mother_JuvenMother tuber of Juvenile 16.26