Gene detail

Detail information of GWHGAAEX005166/evm.TU.scaffold_16.117

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434402418\|ref\|YP_007145303.1\|	4.00E-48	Na+/H+ antiporter NhaD-like permease [Cylindrospermum stagnale PCC 7417]
KOG	KOG2639	0	Sodium sulfate symporter and related arsenite permeases
nr	gi\|672179902\|ref\|XP_008810128.1\|	0	PREDICTED: putative transporter arsB isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M1CXN0\|M1CXN0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400076949}
TAIR	AT1G02260	0	Divalent ion symporter

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3610464	3619698	-

Transcript Sequence
>GWHTAAEX005166 AGATGAACAGATATCAAGAACTGTGCGAAACAGAAAGGGGGATCTCCAAAAATTGAATCTTCTAAAAAAAAATCCCACCTCTACCTCTGTTCAAACAGAGAGGATCTCGAAAGTCAACTCCCAGAGTGTCTGCCACTCCTCAGTGGGACAAAAACAAAGAAATGTCTGTCCACTGGCTTTTTGGTTACTCCGCCGGAATGCCTCCACCGTCGCACCTATAAATATTCAAGAATATTGCATTCGAAACTGAGGAATCATTCATTGATCATGTGCTAAGGACGAGATTCTTATTGCAGCAGTGAGTGAGCTCGTTGATTTTTTGCCAGTTTTGCTTCAAATGTTCAGAAAACTGCTCTCCGATCTTTCCTTCTTTCTCATCTTGAATGCGTCGCTTTGAAGGTTACTACGGTTTTGAGAGCTTATCGTTGTAAACCTCATTCGATTCAACCATTTCGAACGCCTGGCATTCCTGGATTTGATGATAATCTGATTGAAAAATGGCGATGGCGTCGACGATAAAAGTGGTTCTAGGCAGCATAGCCTTTGGATTCTTCTGGGTTCTAGCAGTTTTCCCAGCCGTGCCTTTCCTGCCAATCGGACGAACAGCCGGGGCTCTTCTGGGCGCGATGCTGATGGTCGTTTTTCAGGTCATATCTCCGGAGGAAGCATACGAAGCCATCAATCTTCCGATCCTGGGCCTCCTCTTCGGAACAATGGTCGTCAGCGCCTACCTCGAAAGGGCCGACATGTTCAAGTACCTCGGAAAGCTGCTCTCGTGGAAGAGCAAGGGAGGCAAGGATCTGCTCTTTAGGGTTTGCCTCGTCTCCGCCTTTTCCAGCGCTTTGTTCACCAACGACACCTCCTGCGTTGTCCTCACCGAATTCATCCTCAAGATCGCCAGGAAGAACAATCTCCCTCCTCAGCCTTTCCTCCTCGCCCTCGCCTCCAGCTCCAACATCGGCTCCTCCGCCACTCCCATCGGTAACCCCCAAAACCTCGTCATAGCTGTTCAGAGCAAGATCTCCTTTGTGAAATTCTTGATTGGGATCCTTCCCGCCATGCTGCTCGGCTTGCTTCTCAATGCTGGGATACTATTGTGCTATTTCTGGAAGATCTTGTCTGTAGACGGGGATCGGCCCGCTGCAGATGAAGCCGCTAATTTGGTCCTGGAAGAAGAAGTCAATTCTCACCGCTTTTCGCCTGCCACATTGTCGCATCTTAGCTCTGCCAATTCGCAGGACTTCAGCTCTGCCATCGACGGCATAACCCCAAGCCCTTTGGCGAACGGCGCAATAGAGGCCGCGAGAATCTCTACTGAATCCAGGGAAGCTTTGGAAGAGAATTCTGCTGCCAGCGGAGGAGCAATTGATGCTTCTTTTGACGAGTGGAAGAGGTCTTTGTGGAAGGCTTGTGTCTATCTTGTGACATTGGGAATGCTTGTTTCGCTTCTGCTGGGGCTTAATATGTCCTGGACAGCTATTACTGCTGCTCTTGCTCTTGTGGTTCTAGATTTCAAGGATGCCCGGCCTTGCCTGGAGAAGGTTTCGTATTCTTTGTTGATATTCTTCTGCGGGATGTTTATATCAGTTGAGGGCTTCAATAGGACTGGAATTCCGAGTGCCCTTTGGCAAGCTGTTGAGAGCCATTCTCGTATTGATAGTGTTGGTGGGATTGCTTTGCTTAGTGTTGTCATCCTTGTTTTATCTAATGTAGCATCAAATGTGCCTACTGTTCTACTACTTGGAAGCAGAGTGGCAGCATCAGCAGCTTCAGTCTCGCCATCCGAAGAGGCTCGGGCATGGCTCATACTTGCATGGGTGAGCACGGTTGCTGGAAATCTTTCTCTGTTGGGATCTGCTGCTAACTTGATAGTCTGCGAGCAGGCTCGAAACGCTCAGTTTTACGGCTACAACCTCTCCTTTTGGAGCCACTTAAAGTTTGGAGCGCCTTCTACACTTATTGTAACTGCGATTGGCTTGCCTCTCATAAGGAGTTACTGATCTGAAACTGGTTCTAACATTTAAGGTAAAGATTGTGCTGCTTCATCACTACTGCTTGATATTACAATAGCTGGCCCGTTGCATTGAGCTTTTCAAAGGTGTAGATGTGGAAATATTTAATTTGAAAGTTGCAAAAGCCTCTCACTTTAGTCAAATGTACTAATGTAATAAACATTCACGTTATGAAACCCTATAGAGTTTTCAATTTTGAGCTATAAGAAGCTCTAATAGTAAACTCATGTATTTGATTTTTGTGTTTCAGTGTTAGACTGGTTGTAACAAAAATAACACTTACAAAAAATGGTTGACAGGCAACAATGCCAATGGCATAGGTTCTTCTGCTAAATGAAACTGTCAAGACTGTCTTATGGCTAAATGAAACTGTCAAGACATGATTATTGAATTATAGTCCTAAGGGATAGTATTGCCGTACTTAATTG

Network for GWHGAAEX005166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03600.15	CitMHS	30	445	9.20E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.950
SRP064423	SRR2545915	Juvenile tuber	2.880
SRP108465	SRR5643513	five period of Gastrodia elata	23.580
	SRR5643514	five period of Gastrodia elata	36.210
	SRR5643515	five period of Gastrodia elata	25.700
	SRR5643524	five period of Gastrodia elata	39.030
	SRR5643525	five period of Gastrodia elata	7.860
	SRR5643528	five period of Gastrodia elata	2.740
	SRR5643658	five period of Gastrodia elata	8.100
	SRR5643659	five period of Gastrodia elata	7.630
	SRR5643660	five period of Gastrodia elata	5.650
	SRR5643661	five period of Gastrodia elata	4.670
	SRR5643662	five period of Gastrodia elata	7.960
	SRR5643663	five period of Gastrodia elata	6.330
	SRR5643664	five period of Gastrodia elata	9.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.150
SRP279888	Gastro	Gastrodia elata tuber	5.80
	Juven	Juvenile tuber	2.31
	Mother_Gastro	Mother tuber of Gastrodia elata	15.05
	Mother_Juven	Mother tuber of Juvenile	6.50