Detail information of GWHGAAEX005173/evm.TU.scaffold_16.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392377270|ref|YP_004984429.1| | 0 | aminopeptidase N [Azospirillum brasilense Sp245] |
| KOG | KOG1046 | 0 | Puromycin-sensitive aminopeptidase and related aminopeptidases |
| nr | gi|719998082|ref|XP_010255303.1| | 0 | PREDICTED: puromycin-sensitive aminopeptidase-like [Nelumbo nucifera] |
| Swissprot | tr|Q8H0S9|PSA_ARATH | 0 | Puromycin-sensitive aminopeptidase |
| trEMBL | tr|W9QHB9|W9QHB9_9ROSA | 0 | Aminopeptidase N {ECO:0000313|EMBL:EXB37329.1} |
| TAIR | AT1G63770 | 0 | Peptidase M1 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 3760753 | 3791182 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005173
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01433.19 | Peptidase_M1 | 193 | 318 | 1.60E-28 |
| PF01433.19 | Peptidase_M1 | 334 | 390 | 1.60E-07 |
| PF11940.7 | DUF3458 | 398 | 511 | 4.00E-27 |
| PF17432.1 | DUF3458_C | 516 | 833 | 3.80E-114 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01256 | pepN | Metabolic pathways | map01100 |
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0008237 | Molecular Function | metallopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 86.520 |
| SRR2545915 | Juvenile tuber | 98.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 94.030 |
| SRR5643514 | five period of Gastrodia elata | 125.420 | |
| SRR5643515 | five period of Gastrodia elata | 91.040 | |
| SRR5643524 | five period of Gastrodia elata | 120.300 | |
| SRR5643525 | five period of Gastrodia elata | 65.230 | |
| SRR5643528 | five period of Gastrodia elata | 74.120 | |
| SRR5643658 | five period of Gastrodia elata | 75.190 | |
| SRR5643659 | five period of Gastrodia elata | 48.180 | |
| SRR5643660 | five period of Gastrodia elata | 51.990 | |
| SRR5643661 | five period of Gastrodia elata | 49.270 | |
| SRR5643662 | five period of Gastrodia elata | 48.270 | |
| SRR5643663 | five period of Gastrodia elata | 53.580 | |
| SRR5643664 | five period of Gastrodia elata | 48.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 116.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 122.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 126.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 103.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 119.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 123.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 115.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 123.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 140.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 138.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 162.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 162.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 69.76 |
| Juven | Juvenile tuber | 120.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.57 | |
| Mother_Juven | Mother tuber of Juvenile | 80.22 |