Detail information of GWHGAAEX005174/evm.TU.scaffold_16.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|94969123|ref|YP_591171.1|2.00E-116cysteine synthase [Candidatus Koribacter versatilis Ellin345]
KOGKOG12520Cystathionine beta-synthase and related enzymes
nrgi|743776666|ref|XP_010918745.1|0PREDICTED: bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [Elaeis guineensis]
Swissprottr|Q76MX2|CAS1_SOLTU0Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial (Precursor)
trEMBLtr|M0SZX7|M0SZX7_MUSAM0Cysteine synthase {ECO:0000256|RuleBase:RU003985}
TAIRAT3G614400cysteine synthase C1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002438264573832609-
Transcript Sequence

Network for GWHGAAEX005174

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP503367.00E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13034ATCYSC1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Cyanoamino acid metabolismmap00460

Gene Ontology

GO term OntologyName
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:0004124Molecular Functioncysteine synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.460
SRR2545915Juvenile tuber26.790
SRP108465SRR5643513five period of Gastrodia elata187.530
SRR5643514five period of Gastrodia elata227.730
SRR5643515five period of Gastrodia elata214.520
SRR5643524five period of Gastrodia elata249.490
SRR5643525five period of Gastrodia elata43.480
SRR5643528five period of Gastrodia elata80.480
SRR5643658five period of Gastrodia elata28.660
SRR5643659five period of Gastrodia elata50.860
SRR5643660five period of Gastrodia elata45.020
SRR5643661five period of Gastrodia elata31.570
SRR5643662five period of Gastrodia elata15.960
SRR5643663five period of Gastrodia elata19.730
SRR5643664five period of Gastrodia elata17.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_186.010
SRR6049655Rhizomagastrodiae_C368-T10_good_1176.330
SRR6049656Rhizomagastrodiae_C368-T07_good_1137.580
SRR6049657Rhizomagastrodiae_C368-T07_good_153.780
SRR6049658Rhizomagastrodiae_C368-T04_good_184.330
SRR6049659Rhizomagastrodiae_C368-T04_good_182.490
SRR6049660Rhizomagastrodiae_C368-T01_good_167.500
SRR6049661Rhizomagastrodiae_C368-T04_good_165.520
SRR6049662Rhizomagastrodiae_C368-T01_good_1109.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1119.910
SRR6049664Rhizomagastrodiae_C368-T10_good_1170.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1170.560
SRP279888GastroGastrodia elata tuber 22.86
JuvenJuvenile tuber48.88
Mother_GastroMother tuber of Gastrodia elata 367.56
Mother_JuvenMother tuber of Juvenile 107.29